RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 TBC1D4O60343 1298 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 N4BP1O75113 896 aaKnown RBP12.11□□□□□ -0.47
SSBP1-202ENST00000461433 CSPG5O95196 566 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 CXCL14O95715 111 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 PRKCSHP14314 528 aaPredicted RBP12.11□□□□□ -0.47
SSBP1-202ENST00000461433 GLUD2P49448 558 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 MYL7Q01449 175 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 WDR72Q3MJ13 1102 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 PRSS55Q6UWB4 352 aaPredicted RBP12.11□□□□□ -0.47
SSBP1-202ENST00000461433 TMC7Q7Z402 723 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 GPR65Q8IYL9 337 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 MRPL43Q8N983 215 aaKnown RBP12.11□□□□□ -0.47
SSBP1-202ENST00000461433 RIN2Q8WYP3 895 aaPredicted RBP12.11□□□□□ -0.47
SSBP1-202ENST00000461433 PIK3R5Q8WYR1 880 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 TAF4BQ92750 862 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 NDST4Q9H3R1 872 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.11□□□□□ -0.473e-8■■■■■ 34.9
SSBP1-202ENST00000461433 LMCD1Q9NZU5 365 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 L1RE1Q9UN81 338 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 POLIQ9UNA4 740 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 MTCH2Q9Y6C9 303 aa12.11□□□□□ -0.47
SSBP1-202ENST00000461433 C2CD2LO14523 706 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 OAZ2O95190 189 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 TYMPP19971 482 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 COPB1P53618 953 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 SMC1AQ14683 1233 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ZNF699Q32M78 642 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 VARS2Q5ST30 1063 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PLPP4Q5VZY2 271 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 WSCD1Q658N2 575 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PDE12Q6L8Q7 609 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 RSPO2Q6UXX9 243 aaPredicted RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ADGRD2Q7Z7M1 963 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 GAS2L3Q86XJ1 694 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PDCL2Q8N4E4 241 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 TOP6BLQ8N6T0 577 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 EHBP1Q8NDI1 1231 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 MYLIPQ8WY64 445 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 TATDN2Q93075 761 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 RTP3Q9BQQ7 232 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 VPS16Q9H269 839 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 RXFP1Q9HBX9 757 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 NGRNQ9NPE2 291 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ENTPD7Q9NQZ7 604 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 MRPL17Q9NRX2 175 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 R3HCC1Q9Y3T6 440 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PRRC2BQ5JSZ5 2229 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 GTPBP10A4D1E9 387 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 URODP06132 367 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ODC1P11926 461 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ASPAP45381 313 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 NOP14P78316 857 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 KCNMA1Q12791 1236 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PTPROQ16827 1216 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 ZNF667Q5HYK9 610 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 KIAA1841Q6NSI8 718 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 DPY19L2P1Q6NXN4 242 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 DPH6Q7L8W6 267 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 APPL2Q8NEU8 664 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 MICAL1Q8TDZ2 1067 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 KBTBD7Q8WVZ9 684 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 CLSTN3Q9BQT9 956 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 BCO2Q9BYV7 579 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 SDCBP2Q9H190 292 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 MTRRQ9UBK8 725 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 NXF1Q9UBU9 619 aaKnown RBP12.1□□□□□ -0.47
SSBP1-202ENST00000461433 NME7Q9Y5B8 376 aa12.1□□□□□ -0.47
SSBP1-202ENST00000461433 PLXNA3P51805 1871 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.09□□□□□ -0.47
SSBP1-202ENST00000461433 GABRDO14764 452 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 ADAM12O43184 909 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 HUS1O60921 280 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 CNPP09543 421 aaKnown RBP12.09□□□□□ -0.47
SSBP1-202ENST00000461433 RPL17P18621 184 aaKnown RBP12.09□□□□□ -0.47
SSBP1-202ENST00000461433 SLC9A1P19634 815 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 YWHAHQ04917 246 aaPredicted RBP12.09□□□□□ -0.47
SSBP1-202ENST00000461433 PSMD5Q16401 504 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 OVOS1Q6IE37 1185 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 ANKS3Q6ZW76 656 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 OSTM1Q86WC4 334 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 RNF214Q8ND24 703 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 KLHL5Q96PQ7 755 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 MMS19Q96T76 1030 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 MRPL45Q9BRJ2 306 aaKnown RBP12.09□□□□□ -0.47
SSBP1-202ENST00000461433 CRACR2AQ9BSW2 395 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 SMYD3Q9H7B4 428 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 FNIP2Q9P278 1114 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 SSX2IPQ9Y2D8 614 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 BACE2Q9Y5Z0 518 aa12.09□□□□□ -0.47
SSBP1-202ENST00000461433 TEX28O15482 410 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 HCRTO43612 131 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 TACC1O75410 805 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 FAM163BP0C2L3 166 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 PON1P27169 355 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 RAP1GAPP47736 663 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 CDH8P55286 799 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 TNNC1P63316 161 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 APBA1Q02410 837 aa12.08□□□□□ -0.48
SSBP1-202ENST00000461433 PHLDB3Q6NSJ2 640 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms