RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CDC42EP4Q9H3Q1 356 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 ALG13Q9NP73 1137 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 FGFR1OP2Q9NVK5 253 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 AGAP1Q9UPQ3 857 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 RIPK3Q9Y572 518 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 KIAA0391O15091 583 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 HOXD10P28358 340 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 FNTAP49354 379 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 C11orf63Q6NUN7 778 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 C1orf228Q6PIY5 440 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 NIPA1Q7RTP0 329 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 IQCKQ8N0W5 287 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MSL3Q8N5Y2 521 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 HES6Q96HZ4 224 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MBOAT7Q96N66 472 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 AP5M1Q9H0R1 490 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MAP3K20Q9NYL2 800 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 CDH16O75309 829 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 RASSF2P50749 326 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CLEC16AQ2KHT3 1053 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CCDC14Q49A88 953 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 ANO5Q75V66 913 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SLC9A9Q8IVB4 645 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 DCTN4Q9UJW0 460 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SYNPO2Q9UMS6 1093 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 NR2E1Q9Y466 385 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CST8O60676 142 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CPP00450 1065 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 RARGP13631 454 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SAT1P21673 171 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CLCN3P51790 818 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SESN3P58005 492 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 MYL6P60660 151 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 IFI35P80217 286 aaPredicted RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SARNPP82979 210 aaKnown RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 NFX1Q12986 1120 aaKnown RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 LLGL2Q6P1M3 1020 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 RCOR2Q8IZ40 523 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 MCOLN2Q8IZK6 566 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 NIF3L1Q9GZT8 377 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 DSG3P32926 999 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 MAGEA4P43358 317 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 GTF2A2P52657 109 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 NOGQ13253 232 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 MXD4Q14582 209 aaPredicted RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 ICE2Q659A1 982 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 LRRC34Q8IZ02 419 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 TTC13Q8NBP0 860 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SEMA4DQ92854 862 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 SNX25Q9H3E2 840 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CHST7Q9NS84 486 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 A0A0G2JND7 137 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 KLRG2A4D1S0 409 aaPredicted RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 CCNE2O96020 404 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 TMEM62Q0P6H9 643 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 HIF1AQ16665 826 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 ATF7IP2Q5U623 682 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 EFCAB12Q6NXP0 572 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 ZNF677Q86XU0 584 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 UBA3Q8TBC4 463 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 KIF12Q96FN5 646 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 KLF6Q99612 283 aaPredicted RBP12.28□□□□□ -0.44
NPHP4-204ENST00000460696 HAUS2Q9NVX0 235 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 ASNSD1Q9NWL6 643 aa12.28□□□□□ -0.44
NPHP4-204ENST00000460696 MAP3K6O95382 1288 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 C6orf222P0C671 652 aaPredicted RBP12.27□□□□□ -0.44
NPHP4-204ENST00000460696 HOXD13P35453 343 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 NAMPTP43490 491 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 PDE1BQ01064 536 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 PPM1NQ8N819 430 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 PRELID2Q8N945 189 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 ERVK-5Q9HDB9 667 aa12.27□□□□□ -0.44
NPHP4-204ENST00000460696 BTNL10A8MVZ5 291 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 PSMC4P43686 418 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 AP3M2P53677 418 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 HIRAP54198 1017 aaPredicted RBP12.27□□□□□ -0.45
NPHP4-204ENST00000460696 EIF3EP60228 445 aaKnown RBP12.27□□□□□ -0.45
NPHP4-204ENST00000460696 FMO1Q01740 532 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 TFDP2Q14188 446 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 STAT4Q14765 748 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 FAM71AQ8IYT1 594 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 CHST13Q8NET6 341 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SPIRE2Q8WWL2 714 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 KREMEN1Q96MU8 473 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 PCDHB18PQ96TA0 734 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 DDX23Q9BUQ8 820 aaKnown RBP12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SIX2Q9NPC8 291 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 C4AP0C0L4 1744 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 C4BP0C0L5 1744 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 FZD9O00144 591 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 PROSCO94903 275 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SHBGP04278 402 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 PDGFRAP16234 1089 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SDC4P31431 198 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 SLC8A1P32418 973 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 RFC5P40937 340 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 BCAR1P56945 870 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 LY6KQ17RY6 165 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 IER5Q5VY09 327 aa12.27□□□□□ -0.45
NPHP4-204ENST00000460696 TRIM68Q6AZZ1 485 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms