RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 GID8Q9NWU2 228 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 MTMR4Q9NYA4 1195 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 SEPT3Q9UH03 358 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 FAM32AQ9Y421 112 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 EFCAB14O75071 495 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 CAND2O75155 1236 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 POLBP06746 335 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 MYL3P08590 195 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 MMP10P09238 476 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 TCN1P20061 433 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 ACOT2P49753 483 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 COPAP53621 1224 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 ATXN3P54252 364 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 GEMIN4P57678 1058 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 PDAP1Q13442 181 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 C4orf22Q6V702 233 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 PPIL6Q8IXY8 311 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 ZNF507Q8TCN5 953 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 JPH1Q9HDC5 661 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 HERC5Q9UII4 1024 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 TSR3Q9UJK0 312 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 GTF3C4Q9UKN8 822 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 EIF3DO15371 548 aaKnown RBP eCLIP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 VCAM1P19320 739 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 TARSP26639 723 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 SERPINB1P30740 379 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 CTCFP49711 727 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 CLK1P49759 484 aaKnown RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 MKRN4PQ13434 485 aaPredicted RBP8.14□□□□□ -1.11
NEDD9-204ENST00000448183 RCN1Q15293 331 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 CHI3L2Q15782 390 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 DEPDC1Q5TB30 811 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 KCTD17Q8N5Z5 321 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 TPCN2Q8NHX9 752 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 SCFD2Q8WU76 684 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 SLC10A4Q96EP9 437 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 WRNIP1Q96S55 665 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 C10orf88Q9H8K7 445 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 AGAP1Q9UPQ3 857 aa8.14□□□□□ -1.11
NEDD9-204ENST00000448183 ZC3H13Q5T200 1668 aaKnown RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ATP6V1B1P15313 513 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SULT1E1P49888 294 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 PSMD7P51665 324 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 VCPP55072 806 aaKnown RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 RBP5P82980 135 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SLC44A4Q53GD3 710 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 THEMIS2Q5TEJ8 643 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ZNF677Q86XU0 584 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 MICU2Q8IYU8 434 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 FAM118BQ9BPY3 351 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SCN3BQ9NY72 215 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 MOSPD1Q9UJG1 213 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 NAGPAQ9UK23 515 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 DTNAQ9Y4J8 743 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 COL15A1P39059 1388 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 MAP3K4Q9Y6R4 1608 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 AGLP35573 1532 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 FAM95CA0A1B0GW59 222 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TRIM49D1C9J1S8 452 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 CTDNEP1O95476 244 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 CYP19A1P11511 503 aaPredicted RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SCTRP47872 440 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 STAT5BP51692 787 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ERVK-24P63145 666 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ZCWPW2Q504Y3 356 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 NLRP9Q7RTR0 991 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 RFWD2Q8NHY2 731 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 CALML6Q8TD86 181 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 KCNB2Q92953 911 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ELMO2Q96JJ3 720 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 DNAJC7Q99615 494 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 CAAP1Q9H8G2 361 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TMEM8AQ9HCN3 771 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 PHTF1Q9UMS5 762 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TFR2Q9UP52 801 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 RGS7P49802 495 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SKOR1P84550 965 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 DSG1Q02413 1049 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 LAMB3Q13751 1172 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 FAM182BQ5T319 152 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 MFN1Q8IWA4 741 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 DDI1Q8WTU0 396 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SPATA33Q96N06 139 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 VCPKMTQ9H867 229 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ZNF556Q9HAH1 456 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 OLFML3Q9NRN5 406 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TMEM161AQ9NX61 479 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TSC22D4Q9Y3Q8 395 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ATMINO43313 823 aaPredicted RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 HLA-DRAP01903 254 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 HIST1H2AGP0C0S8 130 aaPredicted RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 RALAP11233 206 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 HIST1H2ADP20671 130 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 RPA1P27694 616 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 SNRPFP62306 86 aaKnown RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 PDK1Q15118 436 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 ANO4Q32M45 955 aa8.13□□□□□ -1.11
NEDD9-204ENST00000448183 PAPD7Q5XG87 772 aaKnown RBP8.13□□□□□ -1.11
NEDD9-204ENST00000448183 TTC33Q6PID6 262 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms