RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 FGFR3P22607 806 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 UBE3AQ05086 875 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 SOWAHAQ2M3V2 549 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 KLHDC7AQ5VTJ3 777 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 PHLDB3Q6NSJ2 640 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.91■□□□□ 0.3
USP40-206ENST00000443711 LIMS2Q7Z4I7 341 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 SPRED2Q7Z698 418 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 RNF168Q8IYW5 571 aaPredicted RBP16.91■□□□□ 0.3
USP40-206ENST00000443711 TMEM86AQ8N2M4 240 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 PPM1KQ8N3J5 372 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 NEK11Q8NG66 645 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 HERC2P3Q9BVR0 1158 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 BCO2Q9BYV7 579 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 GRPEL1Q9HAV7 217 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 SIX2Q9NPC8 291 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 UBE2TQ9NPD8 197 aaPredicted RBP16.91■□□□□ 0.3
USP40-206ENST00000443711 APEX2Q9UBZ4 518 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 DAAM1Q9Y4D1 1078 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 VWA8A3KMH1 1905 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 MYO9BQ13459 2157 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 H3BNC9 293 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 ASPAP45381 313 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 KLK7P49862 253 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 MFAP3P55082 362 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 YWHAEP62258 255 aaKnown RBP16.9■□□□□ 0.3
USP40-206ENST00000443711 GCNT1Q02742 428 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 GPM6BQ13491 265 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 CUL2Q13617 745 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 GSE1Q14687 1217 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 KIAA1841Q6NSI8 718 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 DPY19L2P1Q6NXN4 242 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 SCARA5Q6ZMJ2 495 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 ENOSF1Q7L5Y1 443 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 TAS1R1Q7RTX1 841 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 CEP57Q86XR8 500 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 ARHGEF19Q8IW93 802 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 VPS52Q8N1B4 723 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 TTC39CQ8N584 583 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 SPATA18Q8TC71 538 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 SPPL3Q8TCT6 385 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 ARNTL2Q8WYA1 636 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 TTPALQ9BTX7 342 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 VN1R3Q9BXE9 311 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 FAM124BQ9H5Z6 455 aaPredicted RBP16.9■□□□□ 0.3
USP40-206ENST00000443711 CERS4Q9HA82 394 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 ALG13Q9NP73 1137 aaKnown RBP16.9■□□□□ 0.3
USP40-206ENST00000443711 FAM207AQ9NSI2 230 aaPredicted RBP16.9■□□□□ 0.3
USP40-206ENST00000443711 L1RE1Q9UN81 338 aa16.9■□□□□ 0.3
USP40-206ENST00000443711 TMEM265A0A087WTH1 108 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 TACC1O75410 805 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 WEE2P0C1S8 567 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 RFX1P22670 979 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 TKTP29401 623 aaKnown RBP16.89■□□□□ 0.29
USP40-206ENST00000443711 PBX1P40424 430 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 GLUD2P49448 558 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 ZNF75DP51815 510 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 APBA1Q02410 837 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 BMS1Q14692 1282 aaKnown RBP16.89■□□□□ 0.29
USP40-206ENST00000443711 WSCD1Q658N2 575 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 PDXDC1Q6P996 788 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 RRAGAQ7L523 313 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 ADGRF2Q8IZF7 708 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 THEM5Q8N1Q8 247 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 PDCL2Q8N4E4 241 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 JAKMIP2Q96AA8 810 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 NUP58Q9BVL2 599 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 SNX25Q9H3E2 840 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 SMYD3Q9H7B4 428 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 CHST7Q9NS84 486 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 DNAJC12Q9UKB3 198 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 SSX2IPQ9Y2D8 614 aa16.89■□□□□ 0.29
USP40-206ENST00000443711 TIMM13Q9Y5L4 95 aaPredicted RBP16.89■□□□□ 0.29
USP40-206ENST00000443711 H7C4K7 107 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 GRM6O15303 877 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 OAZ2O95190 189 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 UCHL3P15374 230 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 WARSP23381 471 aaKnown RBP16.88■□□□□ 0.29
USP40-206ENST00000443711 GNL1P36915 607 aaPredicted RBP16.88■□□□□ 0.29
USP40-206ENST00000443711 LHX1P48742 406 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 CDH8P55286 799 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 YWHAHQ04917 246 aaPredicted RBP16.88■□□□□ 0.29
USP40-206ENST00000443711 PTPN21Q16825 1174 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 OVOS1Q6IE37 1185 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 GJB7Q6PEY0 223 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 ANKS3Q6ZW76 656 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 TMC7Q7Z402 723 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 GPR65Q8IYL9 337 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 POF1BQ8WVV4 589 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 MRFAP1L1Q96HT8 127 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 SDCBP2Q9H190 292 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 GANQ9H2C0 597 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 ZNF576Q9H609 170 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 FBXL5Q9UKA1 691 aa16.88■□□□□ 0.29
USP40-206ENST00000443711 GABRDO14764 452 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 NOL4O94818 638 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 URODP06132 367 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 CTSAP10619 480 aa16.87■□□□□ 0.29
USP40-206ENST00000443711 TRIM21P19474 475 aaKnown RBP16.87■□□□□ 0.29
USP40-206ENST00000443711 RAP1GAPP47736 663 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms