RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 CD101Q93033 1021 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 NAP1L4Q99733 375 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 BCAS3Q9H6U6 928 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 DCLRE1BQ9H816 532 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 NMRK1Q9NWW6 199 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 NINJ2Q9NZG7 142 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 APEX2Q9UBZ4 518 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SRRDQ9UH36 339 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CHORDC1Q9UHD1 332 aaPredicted RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 PRR12Q9ULL5 1215 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 RPL26L1Q9UNX3 145 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 TRIM17Q9Y577 477 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 FAM47DPA6NHR8 397 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 FOXN3O00409 490 aaPredicted RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 MAGEB2O15479 319 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CDH16O75309 829 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 LRRN2O75325 713 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SSR1P43307 286 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 SNAP25P60880 206 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 DNAJC3Q13217 504 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CBWD6Q4V339 395 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CBWD3Q5JTY5 395 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CBWD5Q5RIA9 395 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 FAM43BQ6ZT52 329 aaPredicted RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 GPR142Q7Z601 462 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 ANKRD35Q8N283 1001 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 LRRC8CQ8TDW0 803 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 MORC4Q8TE76 937 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SNF8Q96H20 258 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 IKZF4Q9H2S9 585 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 JMJD4Q9H9V9 463 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 HOXC10Q9NYD6 342 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 ACTL7BQ9Y614 415 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CBX6O95503 412 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 DLATP10515 647 aaKnown RBP9.07□□□□□ -0.96
HPS4-206ENST00000439453 CHRNB2P17787 502 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SLC16A2P36021 539 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 VHLP40337 213 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 LAMB3Q13751 1172 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 CPNE8Q86YQ8 564 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 DRAXINQ8NBI3 349 aaPredicted RBP9.07□□□□□ -0.96
HPS4-206ENST00000439453 C1orf54Q8WWF1 131 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SLCO2A1Q92959 643 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 FGD4Q96M96 766 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 RUSC1Q9BVN2 902 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 IRAK4Q9NWZ3 460 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 RGL1Q9NZL6 768 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 STOML1Q9UBI4 398 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SCOCQ9UIL1 159 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 TRAFD1O14545 582 aaPredicted RBP9.07□□□□□ -0.96
HPS4-206ENST00000439453 RNF8O76064 485 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 STAT2P52630 851 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 ITGA8P53708 1063 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 POLE2P56282 527 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 GRB14Q14449 540 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 RIOX2Q8IUF8 465 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 IFT43Q96FT9 208 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 GORASP1Q9BQQ3 440 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 PSTPIP2Q9H939 334 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 LRCH1Q9Y2L9 728 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 MROH7Q68CQ1 1323 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 RASA4BC9J798 803 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 RASA4O43374 803 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SPOPO43791 374 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 TBCAO75347 108 aaKnown RBP9.07□□□□□ -0.96
HPS4-206ENST00000439453 ASMTLO95671 621 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 MARK3P27448 753 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SESN3P58005 492 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 LLGL1Q15334 1064 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 TMEM63BQ5T3F8 832 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 FBXO46Q6PJ61 603 aaPredicted RBP9.07□□□□□ -0.96
HPS4-206ENST00000439453 ADGRF4Q8IZF3 695 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 PHC3Q8NDX5 983 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SPOCK2Q92563 424 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 TRAPPC9Q96Q05 1148 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SLCO1B3Q9NPD5 702 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 FLRT1Q9NZU1 646 aa9.07□□□□□ -0.96
HPS4-206ENST00000439453 SIGLEC16A6NMB1 481 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 TRIM49P0CI25 452 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 TRIM49CP0CI26 452 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 SPATA31C1P0DKV0 1188 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 IVDP26440 423 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 PTPN4P29074 926 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 RCN2Q14257 317 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 TMED2Q15363 201 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 CCDC6Q16204 474 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 SGO2Q562F6 1265 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 SLFN12Q8IYM2 578 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 SHCBP1Q8NEM2 672 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 ERMNQ8TAM6 284 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 PWWP2AQ96N64 755 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 CCDC77Q9BR77 488 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 TLE6Q9H808 572 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 ZMYM2Q9UBW7 1377 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 CLDN3O15551 220 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 SPAG7O75391 227 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 MTA2O94776 668 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 GNRH1P01148 92 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 GSTA2P09210 222 aa9.06□□□□□ -0.96
HPS4-206ENST00000439453 FCGRTP55899 365 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms