RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PARP9Q8IXQ6 854 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 CCDC33Q8N5R6 958 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 TC2NQ8N9U0 490 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 EIF2AQ9BY44 585 aaKnown RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 KDM4CQ9H3R0 1056 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 HIC1Q14526 733 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 HPDLQ96IR7 371 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SSU72P8A0A1W2PR75 194 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 CSE1LP55060 971 aaKnown RBP17.99■□□□□ 0.47
PTPRF-209ENST00000438120 ZNF200P98182 395 aaPredicted RBP17.99■□□□□ 0.47
PTPRF-209ENST00000438120 CDC42EP1Q00587 391 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 PTK7Q13308 1070 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SV2CQ496J9 727 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 ANO5Q75V66 913 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 PDLIM2Q96JY6 352 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 PKP3Q9Y446 797 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 USP31Q70CQ4 1352 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 ARHGAP10A1A4S6 786 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 GLB1LQ6UWU2 654 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 FAM71DQ8N9W8 422 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 GPRC5CQ9NQ84 441 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 KCND2Q9NZV8 630 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SUPT3HB4E1H0 165 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SUPT3HO75486 399 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 GYPCP04921 128 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 ITIH2P19823 946 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 RPA1P27694 616 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 STX3Q13277 289 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 CYTH1Q15438 398 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 DGKDQ16760 1214 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 PNPLA6Q8IY17 1366 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 QRICH2Q9H0J4 1663 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 MAP3K6O95382 1288 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 GPD1P21695 349 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 KYNUQ16719 465 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 C3orf62Q6ZUJ4 267 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SCFD1Q8WVM8 642 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 RUSC1Q9BVN2 902 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 CD274Q9NZQ7 290 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 SH3BP1Q9Y3L3 701 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 PCDHB2Q9Y5E7 798 aa17.99■□□□□ 0.47
PTPRF-209ENST00000438120 IL18RAPO95256 599 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 SGO1Q5FBB7 561 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 JAMLQ86YT9 394 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 C1orf131Q8NDD1 294 aaKnown RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 APOL5Q9BWW9 433 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 JCADQ9P266 1359 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 IGSF9BQ9UPX0 1349 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 TCN1P20061 433 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 IL10P22301 178 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 MDH1P40925 334 aaKnown RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ALG6Q9Y672 507 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 MSH4O15457 936 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 MAPRE2Q15555 327 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 EDRF1Q3B7T1 1238 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 C10orf120Q5SQS8 335 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 NUDT18Q6ZVK8 323 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 SYDE1Q6ZW31 735 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 HS6ST3Q8IZP7 471 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ZNF512BQ96KM6 892 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ABI2Q9NYB9 513 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 CHD1O14646 1710 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 CHUKO15111 745 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ITGA8P53708 1063 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 RAB42Q8N4Z0 105 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ITIH6Q6UXX5 1313 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ERCC6L2Q5T890 1561 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 RSPH10B2B2RC85 870 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ZNF263O14978 683 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 AGTP01019 485 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 RSPH10BP0C881 870 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 ARHGEF7Q14155 803 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 NBPF9Q3BBW0 867 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 KLHDC7AQ5VTJ3 777 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 YY1AP1Q9H869 796 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 GPBP1L1Q9HC44 474 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 EHD2Q9NZN4 543 aa17.98■□□□□ 0.47
PTPRF-209ENST00000438120 PSMC3IPQ9P2W1 217 aaPredicted RBP17.98■□□□□ 0.47
PTPRF-209ENST00000438120 FAXCQ5TGI0 409 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 PKN3Q6P5Z2 889 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 ACER1Q8TDN7 264 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 NIF3L1Q9GZT8 377 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 IQGAP3Q86VI3 1631 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 KLRC1P26715 233 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 RIT2Q99578 217 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 ADNPQ9H2P0 1102 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 C1orf167Q5SNV9 1468 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 PJA2O43164 708 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 SNX31Q8N9S9 440 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 HBP1O60381 514 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 PLEKP08567 350 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-209ENST00000438120 KRT72Q14CN4 511 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 GRAMD4Q6IC98 578 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 SHCBP1Q8NEM2 672 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 SCFD2Q8WU76 684 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 SLC38A7Q9NVC3 462 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 PRMT7Q9NVM4 692 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-209ENST00000438120 TUBE1Q9UJT0 475 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 HPS5Q9UPZ3 1129 aa17.97■□□□□ 0.47
PTPRF-209ENST00000438120 DGKIO75912 1065 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms