RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 FBXW11Q9UKB1 542 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 FRMD4BQ9Y2L6 1034 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 TIMM13Q9Y5L4 95 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 MTCL1Q9Y4B5 1905 aaKnown RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CCDC195A0A1B0GUA6 201 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 OR6C75A6NL08 312 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 TNFRSF10AO00220 468 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 CYB561D2O14569 222 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 SPTLC1O15269 473 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 TBC1D4O60343 1298 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 ZMYND10O75800 440 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 OAZ2O95190 189 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 C8AP07357 584 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 CPB1P15086 417 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 NR2F2P24468 414 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 ELF1P32519 619 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 ROR1Q01973 937 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 ZP2Q05996 745 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 BFSP1Q12934 665 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 MYO1EQ12965 1108 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 STIM1Q13586 685 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 NFIL3Q16649 462 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 PPM1LQ5SGD2 360 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 TPGS2Q68CL5 300 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 CCDC149Q6ZUS6 474 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 RTL10Q7L3V2 364 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 SMYD4Q8IYR2 804 aaPredicted RBP12.34□□□□□ -0.43
COL28A1-203ENST00000435823 OR5B17Q8NGF7 314 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 ZNF461Q8TAF7 563 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 MFSD14AQ96MC6 490 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 GBP4Q96PP9 640 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 PIDD1Q9HB75 910 aa12.34□□□□□ -0.43
COL28A1-203ENST00000435823 SNPHO15079 494 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 XYLBO75191 536 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 RFPL2O75678 378 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 CYP11A1P05108 521 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 HNRNPA1P09651 372 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL28A1-203ENST00000435823 WEE2P0C1S8 567 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 HOXA9P31269 272 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 PPP1R2P41236 205 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 AP3M2P53677 418 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 UVSSAQ2YD98 709 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 EDRF1Q3B7T1 1238 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 COBLL1Q53SF7 1204 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 CLEC17AQ6ZS10 378 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 TRAPPC11Q7Z392 1133 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 THEM5Q8N1Q8 247 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 SLC7A14Q8TBB6 771 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 SMG7Q92540 1137 aaKnown RBP12.33□□□□□ -0.44
COL28A1-203ENST00000435823 RPGRIP1Q96KN7 1286 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 TSG101Q99816 390 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 RHOBTB2Q9BYZ6 727 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 PRKD2Q9BZL6 878 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 TSHZ2Q9NRE2 1034 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 MAFFQ9ULX9 164 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 NR2E1Q9Y466 385 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 SCN1AP35498 2009 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 A0A0C4DFX4 3053 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 PTPRJQ12913 1337 aa12.33□□□□□ -0.44
COL28A1-203ENST00000435823 WDR27A2RRH5 827 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 GOLGA6L22H0YM25 854 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 PRRG1O14668 218 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 PSMA7O14818 248 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 MAPK13O15264 365 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 HUS1O60921 280 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 PHACTR2O75167 634 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 ABLIM3O94929 683 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 KRT13P13646 458 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 ATF2P15336 505 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 PRCPP42785 496 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 ADAM9Q13443 819 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 TRPC3Q13507 836 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 CXorf38Q8TB03 319 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 PARD3BQ8TEW8 1205 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 BORCS6Q96GS4 357 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 HPDLQ96IR7 371 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 FAM84AQ96KN4 292 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 POMKQ9H5K3 350 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 GDAP2Q9NXN4 497 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 AFF4Q9UHB7 1163 aaKnown RBP12.32□□□□□ -0.44
COL28A1-203ENST00000435823 SIX4Q9UIU6 781 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 CDH22Q9UJ99 828 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 MAN1B1Q9UKM7 699 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 SNX9Q9Y5X1 595 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 XIRP2A4UGR9 3374 aa12.32□□□□□ -0.44
COL28A1-203ENST00000435823 LRRIQ3A6PVS8 624 aaPredicted RBP12.31□□□□□ -0.44
COL28A1-203ENST00000435823 LOC730098B7Z3J9 87 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 CETN3O15182 167 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 CLSTN1O94985 981 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 PAPLNO95428 1278 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 LRG1P02750 347 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 PSMC2P35998 433 aaKnown RBP12.31□□□□□ -0.44
COL28A1-203ENST00000435823 CASP4P49662 377 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 GPR17Q13304 367 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 BIRC3Q13489 604 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 ZCWPW2Q504Y3 356 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 WSCD1Q658N2 575 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 ISM2Q6H9L7 571 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 INTS8Q75QN2 995 aaKnown RBP12.31□□□□□ -0.44
COL28A1-203ENST00000435823 FAM186BQ8IYM0 893 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms