RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PGRMC1O00264 195 aaKnown RBP28.23■■■□□ 2.11
LDB1-202ENST00000425280 STAU1O95793 577 aaKnown RBP28.23■■■□□ 2.11
LDB1-202ENST00000425280 PTP4A2Q12974 167 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 PPP1R2P3Q6NXS1 205 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 ALKAL1Q6UXT8 129 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 PHLDB2Q86SQ0 1253 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 HNRNPLLQ8WVV9 542 aaKnown RBP28.23■■■□□ 2.11
LDB1-202ENST00000425280 CYP3A43Q9HB55 503 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 ARFGAP3Q9NP61 516 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 NOC2LQ9Y3T9 749 aaKnown RBP28.23■■■□□ 2.11
LDB1-202ENST00000425280 RECQL4O94761 1208 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 MRPS6P82932 125 aaKnown RBP28.22■■■□□ 2.11
LDB1-202ENST00000425280 ZBTB6Q15916 424 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 LIN9Q5TKA1 542 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 MMS22LQ6ZRQ5 1243 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 ALG3Q92685 438 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 CREBZFQ9NS37 354 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 PCDHGC3Q9UN70 934 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 LSM8O95777 96 aaKnown RBP28.22■■■□□ 2.11
LDB1-202ENST00000425280 P4HA1P13674 534 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 RAD23BP54727 409 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 C1QBPQ07021 282 aaKnown RBP28.22■■■□□ 2.11
LDB1-202ENST00000425280 CPNE8Q86YQ8 564 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 WHAMMQ8TF30 809 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 CD101Q93033 1021 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 APOL6Q9BWW8 343 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 CFHR5Q9BXR6 569 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 CARD9Q9H257 536 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 CNTN3Q9P232 1028 aa28.22■■■□□ 2.11
LDB1-202ENST00000425280 RRP9O43818 475 aaKnown RBP28.21■■■□□ 2.11
LDB1-202ENST00000425280 FAM228AQ86W67 206 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 KLHDC9Q8NEP7 349 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 HDAC7Q8WUI4 952 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 KRT35Q92764 455 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 SRRDQ9UH36 339 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 ANAPC7Q9UJX3 599 aa28.21■■■□□ 2.11
LDB1-202ENST00000425280 ASGR1P07306 291 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 PAEPP09466 180 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 AKAP5P24588 427 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 KCNA10Q16322 511 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 FAM47CQ5HY64 1035 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 UBL4BQ8N7F7 174 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 WNT8BQ93098 351 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 TRIM7Q9C029 511 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 TUBGCP4Q9UGJ1 667 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 HMGXB4Q9UGU5 601 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 TTC7AQ9ULT0 858 aaPredicted RBP28.2■■■□□ 2.11
LDB1-202ENST00000425280 CDY2AQ9Y6F7 541 aa28.2■■■□□ 2.11
LDB1-202ENST00000425280 CILPO75339 1184 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 ERLIN1O75477 346 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 TRPA1O75762 1119 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 MMP8P22894 467 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 MARCKSL1P49006 195 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 MRPS25P82663 173 aaKnown RBP28.2■■■□□ 2.1
LDB1-202ENST00000425280 C1orf131Q8NDD1 294 aaKnown RBP28.2■■■□□ 2.1
LDB1-202ENST00000425280 CD99L2Q8TCZ2 262 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 UBE2Q2Q8WVN8 375 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 TWNKQ96RR1 684 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 WNT8AQ9H1J5 351 aa28.2■■■□□ 2.1
LDB1-202ENST00000425280 ZMYND10O75800 440 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 MCM3P25205 808 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 CDH5P33151 784 aaPredicted RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 GLRA4Q5JXX5 417 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 CCSAPQ6IQ19 270 aaPredicted RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 C8orf74Q6P047 294 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 SLC4A11Q8NBS3 891 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 TMEM35BQ8NCS4 154 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 C18orf25Q96B23 403 aaPredicted RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 ELOVL4Q9GZR5 314 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 DMGDHQ9UI17 866 aaKnown RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 TRPV2Q9Y5S1 764 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 SPOPO43791 374 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 MYCNP04198 464 aaPredicted RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 CD19P15391 556 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 PEX5P50542 639 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 ORC1Q13415 861 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 LONRF2Q1L5Z9 754 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 GLE1Q53GS7 698 aaKnown RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 BEND6Q5SZJ8 279 aaPredicted RBP28.19■■■□□ 2.1
LDB1-202ENST00000425280 PLEKHA7Q6IQ23 1121 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 SERINC5Q86VE9 423 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 WDTC1Q8N5D0 677 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 ZNF518BQ9C0D4 1074 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 RNF39Q9H2S5 420 aa28.19■■■□□ 2.1
LDB1-202ENST00000425280 PDCD11Q14690 1871 aaKnown RBP28.18■■■□□ 2.1
LDB1-202ENST00000425280 M0QZ92 97 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 TNNC1P63316 161 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 MYO1EQ12965 1108 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 MAMLD1Q13495 774 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 BEST2Q8NFU1 509 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 RNPC3Q96LT9 517 aaKnown RBP28.18■■■□□ 2.1
LDB1-202ENST00000425280 KRT12Q99456 494 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 RNF19AQ9NV58 838 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 CENPFP49454 3210 aa28.18■■■□□ 2.1
LDB1-202ENST00000425280 PPEF2O14830 753 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 CTNNA2P26232 953 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 CST5P28325 142 aaPredicted RBP28.17■■■□□ 2.1
LDB1-202ENST00000425280 SLC7A5Q01650 507 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 ZNF211Q13398 564 aaPredicted RBP28.17■■■□□ 2.1
LDB1-202ENST00000425280 DENND1BQ6P3S1 775 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms