RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MRPL9Q9BYD2 267 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 MIOSQ9NXC5 875 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 TRMT1Q9NXH9 659 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 TTC3P53804 2025 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 ALPK3Q96L96 1907 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 KPNA7A9QM74 516 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 INPPL1O15357 1258 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 HUS1O60921 280 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 CSF2RAP15509 400 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 ACO1P21399 889 aaKnown RBP18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 GNA15P30679 374 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 CLCN1P35523 988 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 SLC18A3Q16572 532 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 CLLU1OSQ5K130 101 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 SLC47A2Q86VL8 602 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 CCAR2Q8N163 923 aaKnown RBP18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 AGPAT1Q99943 283 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 ADAMTS1Q9UHI8 967 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 ADGRG1Q9Y653 693 aa18.3■□□□□ 0.52
CCDC28B-202ENST00000421922 ABHD14A-ACY1A0A1B0GW23 586 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 ARHGEF37A1IGU5 675 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 THAP12O43422 761 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 AMHP03971 560 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 CYP11B1P15538 503 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 PAX3P23760 479 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 CLCNKBP51801 687 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 AFF1P51825 1210 aaKnown RBP18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 GFPT1Q06210 699 aaPredicted RBP18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 PPIGQ13427 754 aaKnown RBP eCLIP18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 ARHGAP29Q52LW3 1261 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 TAF3Q5VWG9 929 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 DSTYKQ6XUX3 929 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 ZNF677Q86XU0 584 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 C7orf61Q8IZ16 206 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 C17orf53Q8N3J3 647 aaPredicted RBP18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 APPL2Q8NEU8 664 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 EPS8L1Q8TE68 723 aa18.29■□□□□ 0.52
CCDC28B-202ENST00000421922 LTBP2Q14767 1821 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 CDH8P55286 799 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 LILRA4P59901 499 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 NAB2Q15742 525 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 TCTN1Q2MV58 587 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 ZNF394Q53GI3 561 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 C10orf76Q5T2E6 689 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 NOP9Q86U38 636 aaKnown RBP18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 GLYCTKQ8IVS8 523 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 UBR7Q8N806 425 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 SLC20A1Q8WUM9 679 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 SNX25Q9H3E2 840 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 TBC1D13Q9NVG8 400 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 GDAP2Q9NXN4 497 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 BARX2Q9UMQ3 279 aaPredicted RBP18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 CNTN6Q9UQ52 1028 aa18.28■□□□□ 0.52
CCDC28B-202ENST00000421922 MED7O43513 233 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 UPP2O95045 317 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 CD19P15391 556 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 MAGEA1P43355 309 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 CDR2Q01850 454 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 CYP27A1Q02318 531 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 CCDC122Q5T0U0 273 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 TOP6BLQ8N6T0 577 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 PPP1R13BQ96KQ4 1090 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 TSGA10Q9BZW7 698 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 SDCBP2Q9H190 292 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 IL23AQ9NPF7 189 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 PCDHA13Q9Y5I0 950 aa18.27■□□□□ 0.52
CCDC28B-202ENST00000421922 A0A087X0T9 212 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 TBKBP1A7MCY6 615 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 CYB561D2O14569 222 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 CILPO75339 1184 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 B3GAT3O94766 335 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 BAIAP3O94812 1187 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 LCA5LO95447 670 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 PAEPP09466 180 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 FAM228BP0C875 321 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 ITGB8P26012 769 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 OR1G1P47890 313 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 ZNF132P52740 706 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 FPGSQ05932 587 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 INCA1Q0VD86 236 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 UPP1Q16831 310 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 ASTE1Q2TB18 679 aaPredicted RBP18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 ALKBH5Q6P6C2 394 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 DCLRE1AQ6PJP8 1040 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 ADGRF2Q8IZF7 708 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 LRRC43Q8N309 656 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 OR6B3Q8NGW1 331 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 NT5C1AQ9BXI3 368 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 KCND1Q9NSA2 647 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 CACNG4Q9UBN1 327 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 NOCTQ9UK39 431 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 CEP83Q9Y592 693 aa18.26■□□□□ 0.51
CCDC28B-202ENST00000421922 CEP290O15078 2479 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 ZNF500O60304 480 aaPredicted RBP18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 ACRP10323 421 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 ODC1P11926 461 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 VAV2P52735 878 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 NDST1P52848 882 aa18.25■□□□□ 0.51
CCDC28B-202ENST00000421922 KIF5AQ12840 1032 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms