RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ZFATQ9P243 1243 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ZC3H7BQ9UGR2 993 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 SMG5Q9UPR3 1016 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 BNIP3LO60238 219 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 KLC1Q07866 573 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 GIT2Q14161 759 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 COG2Q14746 738 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 DSTYKQ6XUX3 929 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 EXOC8Q8IYI6 725 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ATP8B4Q8TF62 1192 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 FAM193BQ96PV7 902 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 MRPL4Q9BYD3 311 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 JPH1Q9HDC5 661 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 KCNH7Q9NS40 1196 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 PCMTD2Q9NV79 361 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 THEGQ9P2T0 379 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 XPO7Q9UIA9 1087 aaKnown RBP11.32□□□□□ -0.6
CCDC40-204ENST00000397545 HAO1Q9UJM8 370 aa11.32□□□□□ -0.6
CCDC40-204ENST00000397545 ECM29Q5VYK3 1845 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 WNK3Q9BYP7 1800 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 RNF225M0QZC1 329 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MAP2K7O14733 419 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 EPHB6O15197 1021 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 WDR46O15213 610 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 UBOX5O94941 541 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 BIRC2Q13490 618 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 FSCBQ5H9T9 825 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MEI1Q5TIA1 1274 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 BZW1Q7L1Q6 419 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 ZFPM1Q8IX07 1006 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 ACER1Q8TDN7 264 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 SENP7Q9BQF6 1050 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 WWP1Q9H0M0 922 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 RPAP3Q9H6T3 665 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MID2Q9UJV3 735 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 KRT4P19013 534 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 SOX11P35716 441 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 KCNMA1Q12791 1236 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MORF4L2Q15014 288 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 PLCB4Q15147 1175 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 CYTH1Q15438 398 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 CYP4A22Q5TCH4 519 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 RCOR2Q8IZ40 523 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 DAGLBQ8NCG7 672 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 SPATA18Q8TC71 538 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 DHX38Q92620 1227 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 CRAMP1Q96RY5 1269 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MKNK1Q9BUB5 465 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 DLGAP2Q9P1A6 1054 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 PSMC3IPQ9P2W1 217 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 A8MXQ7 604 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 NR3C2P08235 984 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 KCNT1Q5JUK3 1230 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 ACAD11Q709F0 780 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 ARID3BQ8IVW6 561 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 RNF139Q8WU17 664 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 MTBPQ96DY7 904 aa11.31□□□□□ -0.6
CCDC40-204ENST00000397545 RANBP17Q9H2T7 1088 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 CDC42EP4Q9H3Q1 356 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 DDX56Q9NY93 547 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 CPSF3Q9UKF6 684 aaKnown RBP11.31□□□□□ -0.6
CCDC40-204ENST00000397545 GOLGA8QA0A0J9YX86 632 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 GOLGA8OA6NCC3 632 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 GOLGA8NF8WBI6 632 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 H3BRJ5 948 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 CCDC22O60826 627 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 SKAP2O75563 359 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 IFI35P80217 286 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 MTMR2Q13614 643 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 TMEM154Q6P9G4 183 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 RTKN2Q8IZC4 609 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 AGGF1Q8N302 714 aaeCLIP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 OR6P1Q8NGX9 317 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 PNMA5Q96PV4 448 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 WARS2Q9UGM6 360 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 HERC5Q9UII4 1024 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 GTF3C4Q9UKN8 822 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 BTAF1O14981 1849 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 DGAT1O75907 488 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ANP32DO95626 131 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 UBTFL6P0CB48 400 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 LCP1P13796 627 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 RRM1P23921 792 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 GTF2H1P32780 548 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 CDK17Q00537 523 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 PTK7Q13308 1070 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 HIC1Q14526 733 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 FASTKD1Q53R41 847 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 GPAT2Q6NUI2 795 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 CCDC33Q8N5R6 958 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 FAM71DQ8N9W8 422 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ZNF507Q8TCN5 953 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 DNAJC9Q8WXX5 260 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 PGBD4Q96DM1 585 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ROPN1BQ9BZX4 212 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 ROPN1Q9HAT0 212 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 TMEM51Q9NW97 253 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 TSR3Q9UJK0 312 aaKnown RBP11.3□□□□□ -0.6
CCDC40-204ENST00000397545 AGAP1Q9UPQ3 857 aa11.3□□□□□ -0.6
CCDC40-204ENST00000397545 L3MBTL1Q9Y468 752 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms