RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 TRIM13O60858 407 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SLC16A1P53985 500 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 ATP2C1P98194 919 aaPredicted RBP14.6□□□□□ -0.07
COL4A3-202ENST00000396578 BFSP2Q13515 415 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 PTCH1Q13635 1447 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 CCNI2Q6ZMN8 369 aaPredicted RBP14.6□□□□□ -0.07
COL4A3-202ENST00000396578 MCEEQ96PE7 176 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SPATA16Q9BXB7 569 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 WDR35Q9P2L0 1181 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 PDZK1P1A8MUH7 402 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 NCF4Q15080 339 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 CHI3L2Q15782 390 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 CYFIP1Q7L576 1253 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 RNPEPQ9H4A4 650 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SMARCAD1Q9H4L7 1026 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 NOD2Q9HC29 1040 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 ASAP1Q9ULH1 1129 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 NUDT2P50583 147 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 CCDC149Q6ZUS6 474 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 ADCK2Q7Z695 626 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SLC30A5Q8TAD4 765 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 TMEM47Q9BQJ4 181 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 YIPF2Q9BWQ6 316 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 PIDD1Q9HB75 910 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 NPM3O75607 178 aaKnown RBP14.6□□□□□ -0.07
COL4A3-202ENST00000396578 CHMP1BQ7LBR1 199 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 WDR48Q8TAF3 677 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SPATA18Q8TC71 538 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 COA1Q9GZY4 146 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 HPS4Q9NQG7 708 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 GYS1P13807 737 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 SNRNP27Q8WVK2 155 aaKnown RBP14.6□□□□□ -0.07
COL4A3-202ENST00000396578 PAK5Q9P286 719 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 FAM153AQ9UHL3 310 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 AATKQ6ZMQ8 1374 aa14.6□□□□□ -0.07
COL4A3-202ENST00000396578 FCER1AP12319 257 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 USP11P51784 963 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 OXER1Q8TDS5 423 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 CPA5Q8WXQ8 436 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 ZBTB39O15060 712 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 GRM4Q14833 912 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 TIPINQ9BVW5 301 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 TUFT1Q9NNX1 390 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 SMAPO00193 183 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 TRIM25Q14258 630 aaKnown RBP14.59□□□□□ -0.07
COL4A3-202ENST00000396578 ADGRF4Q8IZF3 695 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 C19orf18Q8NEA5 215 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 ADAM33Q9BZ11 813 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 KLHL31Q9H511 634 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 SLAIN2Q9P270 581 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 ADAMTS12P58397 1594 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 SLC10A4Q96EP9 437 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 CARD9Q9H257 536 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 DCDC2Q9UHG0 476 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 VPS33BQ9H267 617 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 YWHABP31946 246 aaKnown RBP14.59□□□□□ -0.07
COL4A3-202ENST00000396578 CORO7P57737 925 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 KBTBD12Q3ZCT8 623 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 SNRNP48Q6IEG0 339 aaKnown RBP14.59□□□□□ -0.07
COL4A3-202ENST00000396578 TBC1D10CQ8IV04 446 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 E2F7Q96AV8 911 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 ATP10AO60312 1499 aa14.59□□□□□ -0.07
COL4A3-202ENST00000396578 PDXKO00764 312 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 WEE2P0C1S8 567 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 GRK2P25098 689 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 ITIH4Q14624 930 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 RCSD1Q6JBY9 416 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 CASP10Q92851 521 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 CHP1Q99653 195 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 RFX7Q2KHR2 1363 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 CPB1P15086 417 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 MAGEA4P43358 317 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 MTFR1Q15390 333 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 SPATA2LQ8IUW3 424 aaPredicted RBP14.58□□□□□ -0.07
COL4A3-202ENST00000396578 ADAM30Q9UKF2 790 aa14.58□□□□□ -0.07
COL4A3-202ENST00000396578 TRIM24O15164 1050 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 SPATA33Q96N06 139 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 TSC22D2O75157 780 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 ASMTLO95671 621 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 PGK2P07205 417 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 HNRNPH1P31943 449 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 GEMIN4P57678 1058 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 PTK6Q13882 451 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 C4orf22Q6V702 233 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 GOLPH3Q9H4A6 298 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 TMEM260Q9NX78 707 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 CHMP2BQ9UQN3 213 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 CYBBP04839 570 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 PSMC6P62333 389 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 STX5Q13190 355 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 PTRHD1Q6GMV3 140 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 TMC5Q6UXY8 1006 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 A0A1B0GTH6 734 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 SSU72P8A0A1W2PR75 194 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 EFNA5P52803 228 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 DDX53Q86TM3 631 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 RAVER2Q9HCJ3 691 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 RBM12Q9NTZ6 932 aaKnown RBP14.58□□□□□ -0.08
COL4A3-202ENST00000396578 LAMC2Q13753 1193 aa14.58□□□□□ -0.08
COL4A3-202ENST00000396578 OR8H2Q8N162 312 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms