RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 HMGXB4Q9UGU5 601 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 GNA15P30679 374 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 BFSP2Q13515 415 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 DNTTIP2Q5QJE6 756 aaKnown RBP13.59□□□□□ -0.23
TRIM39-204ENST00000396548 FAM43BQ6ZT52 329 aaPredicted RBP13.59□□□□□ -0.23
TRIM39-204ENST00000396548 CRIPAKQ8N1N5 446 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 SLC4A11Q8NBS3 891 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 UBE2Q2Q8WVN8 375 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 TFAP2BQ92481 460 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 ELOVL4Q9GZR5 314 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 TSPYL2Q9H2G4 693 aaPredicted RBP13.59□□□□□ -0.23
TRIM39-204ENST00000396548 LUC7LQ9NQ29 371 aaKnown RBP13.59□□□□□ -0.23
TRIM39-204ENST00000396548 PCDHGC5Q9Y5F6 944 aa13.59□□□□□ -0.23
TRIM39-204ENST00000396548 MOCS3O95396 460 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 H2AFZP0C0S5 128 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 CD58P19256 250 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 H2AFVQ71UI9 128 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 ANKLE1Q8NAG6 615 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 ZNF606Q8WXB4 792 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 GAD1Q99259 594 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 PCDHGC3Q9UN70 934 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 MACROD2A1Z1Q3 448 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 ANKRD62A6NC57 917 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 PAEPP09466 180 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 SKIP12755 728 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 IGFBP6P24592 240 aaPredicted RBP13.58□□□□□ -0.24
TRIM39-204ENST00000396548 YWHAEP62258 255 aaKnown RBP13.58□□□□□ -0.24
TRIM39-204ENST00000396548 AMPD2Q01433 879 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 MYO1EQ12965 1108 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 ACAD10Q6JQN1 1059 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 VWCEQ96DN2 955 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 ARHGEF26Q96DR7 871 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 THAP2Q9H0W7 228 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 LTBP2Q14767 1821 aa13.58□□□□□ -0.24
TRIM39-204ENST00000396548 MYH10P35580 1976 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 CXCL10P02778 98 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 TFRCP02786 760 aaKnown RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 FTLP02792 175 aaPredicted RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 CASQ1P31415 396 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 CDH5P33151 784 aaPredicted RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 HADHBP55084 474 aaKnown RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 CENPCQ03188 943 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 PTP4A2Q12974 167 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 SOWAHAQ2M3V2 549 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 LRRC57Q8N9N7 239 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 WNT8AQ9H1J5 351 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 XPOTO43592 962 aaKnown RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 P4HA1P13674 534 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 HACE1Q8IYU2 909 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 WDTC1Q8N5D0 677 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 KBTBD7Q8WVZ9 684 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 ZNF592Q92610 1267 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 UBN1Q9NPG3 1134 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 BARX2Q9UMQ3 279 aaPredicted RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 TMCO5BA8MYB1 307 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 EOMESO95936 686 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 PNPLA4P41247 253 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 NOMO3P69849 1222 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 CD300LGQ6UXG3 332 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 SLC24A5Q71RS6 500 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 SLFN11Q7Z7L1 901 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 MRPL45Q9BRJ2 306 aaKnown RBP13.57□□□□□ -0.24
TRIM39-204ENST00000396548 COG5Q9UP83 839 aa13.57□□□□□ -0.24
TRIM39-204ENST00000396548 MKI67P46013 3256 aaKnown RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 GRID2IPA4D2P6 1211 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TLR3O15455 904 aaKnown RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 PQBP1O60828 265 aaKnown RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TACC1O75410 805 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 MTA2O94776 668 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 CYP1A2P05177 515 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 LILRA4P59901 499 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TRIM60Q495X7 471 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 PAPD7Q5XG87 772 aaKnown RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TRIM58Q8NG06 486 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 CYFIP2Q96F07 1278 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 FTHL17Q9BXU8 183 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 RSAD1Q9HA92 442 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 SLC38A7Q9NVC3 462 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 KPNA7A9QM74 516 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 THP07101 528 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 AARSP49588 968 aaKnown RBP eCLIP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 CTCFP49711 727 aaPredicted RBP13.56□□□□□ -0.24
TRIM39-204ENST00000396548 SCNN1GP51170 649 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TRIM72Q6ZMU5 477 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 MON1BQ7L1V2 547 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TTC39CQ8N584 583 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 PGBD4Q96DM1 585 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TMEM176AQ96HP8 235 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TBX21Q9UL17 535 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 COL4A6Q14031 1691 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 TET1Q8NFU7 2136 aa13.56□□□□□ -0.24
TRIM39-204ENST00000396548 BUB1O43683 1085 aa13.55□□□□□ -0.24
TRIM39-204ENST00000396548 HSPA1AP0DMV8 641 aaKnown RBP13.55□□□□□ -0.24
TRIM39-204ENST00000396548 HSPA1BP0DMV9 641 aaKnown RBP13.55□□□□□ -0.24
TRIM39-204ENST00000396548 BRD2P25440 801 aaKnown RBP13.55□□□□□ -0.24
TRIM39-204ENST00000396548 TNNC1P63316 161 aa13.55□□□□□ -0.24
TRIM39-204ENST00000396548 UPP1Q16831 310 aa13.55□□□□□ -0.24
TRIM39-204ENST00000396548 TPCN2Q8NHX9 752 aa13.55□□□□□ -0.24
TRIM39-204ENST00000396548 SLC35G2Q8TBE7 412 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms