RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RBM15Q96T37 977 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 GPR63Q9BZJ6 419 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 DIABLOQ9NR28 239 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 PAPOLBQ9NRJ5 636 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 KDM6AO15550 1401 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 hCG_2014768A0A024R1R8 64 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 TBL3Q12788 808 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM180AQ6UWF9 173 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 KRT78Q8N1N4 520 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 VPS50Q96JG6 964 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 CNBD2Q96M20 576 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 CPVLQ9H3G5 476 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC24A3Q9HC58 644 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 AK9Q5TCS8 1911 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 MAGI2Q86UL8 1455 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM47DPA6NHR8 397 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 HMBSP08397 361 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 CHN1P15882 459 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 LINC00523Q86TU6 105 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 USP33Q8TEY7 942 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 SGSM3Q96HU1 749 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 USP15Q9Y4E8 981 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 SNX9Q9Y5X1 595 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 OVOS2A0A0G2JMS6 1433 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 OVOS2A0A0J9YW53 1432 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 GH1P01241 217 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ITGA4P13612 1032 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 OVOS2Q6IE36 1432 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM65Q6PJ69 517 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 BRD8Q9H0E9 1235 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ALDH1A3P47895 512 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 CLK1P49759 484 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 TRAPPC11Q7Z392 1133 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ARMC2Q8NEN0 867 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 DTX3LQ8TDB6 740 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 USP13Q92995 863 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 ERVK-7P63135 1459 aa13.37□□□□□ -0.27
CCDC88C-204ENST00000389857 EIF2S1P05198 315 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC18A3Q16572 532 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM71Q2Q1W2 868 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 TSEN34Q9BSV6 310 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 PCDHB7Q9Y5E2 793 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 CROCC2H7BZ55 1655 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 FAM196BA6NMK8 535 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 TK2O00142 265 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 PCSK1P29120 753 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM48Q8IWZ4 208 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 TRPC5OSA6NMA1 111 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 CNTN1Q12860 1018 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SFSWAPQ12872 951 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 AGBL2Q5U5Z8 902 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC44A5Q8NCS7 719 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SH3GL3Q99963 347 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SNX12Q9UMY4 172 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 M0R3G1 203 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 RGS7P49802 495 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 LVRNQ6Q4G3 990 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 POLD4Q9HCU8 107 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 CACNA2D2Q9NY47 1150 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 LZTS1Q9Y250 596 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SPACA6W5XKT8 324 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 SNTNA6NMZ2 147 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 ZRANB3Q5FWF4 1079 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 P3H2Q8IVL5 708 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 LPAR1Q92633 364 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 NT5C1AQ9BXI3 368 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 RSAD1Q9HA92 442 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 GRID1Q9ULK0 1009 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 NPHP3-ACAD11A0A0J9YXS1 232 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 HEATR9A2RTY3 570 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 PGK2P07205 417 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 HSPA13P48723 471 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 MTMR2Q13614 643 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 MRPS26Q9BYN8 205 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 VPS33BQ9H267 617 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 GJB4Q9NTQ9 266 aa13.36□□□□□ -0.27
CCDC88C-204ENST00000389857 KIF1CO43896 1103 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SP8Q8IXZ3 490 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SLC30A5Q8TAD4 765 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 TRIM8Q9BZR9 551 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 ALDH8A1Q9H2A2 487 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 GOLPH3Q9H4A6 298 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 STN1Q9H668 368 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SPATA31E1Q6ZUB1 1445 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 ARHGEF40Q8TER5 1519 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 MZF1P28698 734 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 FMO5P49326 533 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 INPP5DQ92835 1189 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 METP08581 1390 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 COG2Q14746 738 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 EFHC1Q5JVL4 640 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 FGD2Q7Z6J4 655 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 WNK4Q96J92 1243 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 APOL5Q9BWW9 433 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 H0YC42 278 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 SNRPAP09012 282 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 NMT1P30419 496 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 POU4F1Q01851 419 aa13.35□□□□□ -0.27
CCDC88C-204ENST00000389857 LMBRD2Q68DH5 695 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms