RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZSCAN21Q9Y5A6 473 aaPredicted RBP0.09□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF318Q5VUA4 2279 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 KLLNB2CW77 178 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 POC1B-GALNT4F8VUJ3 575 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 LMX1BO60663 402 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 FGF2P09038 288 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZFXP17010 805 aaPredicted RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 GCSHP23434 173 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 CEACAM8P31997 349 aaPredicted RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 CLRN1P58418 232 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 PHC1P78364 1004 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 ITIH3Q06033 890 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 PPATQ06203 517 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 MTX1Q13505 466 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 AASDHQ4L235 1098 aaPredicted RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 INO80DQ53TQ3 878 aaPredicted RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 AARS2Q5JTZ9 985 aaKnown RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 NHLRC1Q6VVB1 395 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 LIN28BQ6ZN17 250 aaKnown RBP eCLIP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 USP53Q70EK8 1073 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 SRGAP1Q7Z6B7 1085 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 RSPH3Q86UC2 560 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 UNC5BQ8IZJ1 945 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 GALNT4Q8N4A0 578 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 ANKRD52Q8NB46 1076 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 RBBP8NLQ8NC74 664 aaPredicted RBP0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 B3GALNT2Q8NCR0 500 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 PIK3C3Q8NEB9 887 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 CYP2W1Q8TAV3 490 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 PGLYRP2Q96PD5 576 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 ABHD16BQ9H3Z7 469 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 LRP2BPQ9P2M1 347 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRSS21Q9Y6M0 314 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZHX2Q9Y6X8 837 aa0.08□□□□□ -2.4
RNU6-540P-201ENST00000384622 DHX57Q6P158 1386 aaKnown RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 QSOX1O00391 747 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 SCDO00767 359 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 SPTLC2O15270 562 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ASAP2O43150 1006 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 EGFP01133 1207 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 F7P08709 466 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ALAS1P13196 640 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF143P52747 638 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 FPGSQ05932 587 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 DMP1Q13316 513 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 PMS2P11Q13670 270 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 TCTE1Q5JU00 501 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 STPG1Q5TH74 334 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 CC2D1AQ6P1N0 951 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 NAPRTQ6XQN6 538 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 TRILQ7L0X0 811 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF551Q7Z340 670 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 CHPFQ8IZ52 775 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 CBARPQ8N350 705 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 RFLNBQ8N5W9 214 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 LMNTD1Q8N9Z9 388 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 PJA1Q8NG27 643 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 FAM222BQ8WU58 562 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 PHF21BQ96EK2 531 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ZNF599Q96NL3 588 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 MED15Q96RN5 788 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ALG1Q9BT22 464 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 EFHD1Q9BUP0 239 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ALG8Q9BVK2 526 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 RBM38Q9H0Z9 239 aaKnown RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ABCB10Q9NRK6 738 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 DLGAP2Q9P1A6 1054 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 BIN2Q9UBW5 565 aaPredicted RBP0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 ADGRA2Q96PE1 1338 aa0.07□□□□□ -2.4
RNU6-540P-201ENST00000384622 FBN1P35555 2871 aaKnown RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PLSCR5A0PG75 271 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 SLC16A5O15375 505 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PRLP01236 227 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 CHRM5P08912 532 aaPredicted RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 HOXB2P14652 356 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 JUPP14923 745 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PPP3CBP16298 524 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ANOS1P23352 680 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 CLCN5P51795 746 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 P2RX3P56373 397 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 CD69Q07108 199 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PDE4CQ08493 712 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 GTF2H3Q13889 308 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 TMEM132BQ14DG7 1078 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 SHBQ15464 509 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 PCID2Q5JVF3 399 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 C9orf57Q5W0N0 161 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 OTUD7BQ6GQQ9 843 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 SLFN12LQ6IEE8 588 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ANKRD16Q6P6B7 361 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 VHLLQ6RSH7 139 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 TRIM72Q6ZMU5 477 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 C16orf82Q7Z2V1 217 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ARMC9Q7Z3E5 817 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 ADGRA1Q86SQ6 560 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 RTN4RL1Q86UN2 441 aaPredicted RBP0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 Q8N7P7 452 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 AMER3Q8N944 861 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 SLC35B2Q8TB61 432 aa0.06□□□□□ -2.4
RNU6-540P-201ENST00000384622 KCTD13Q8WZ19 329 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms