RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SCFD2Q8WU76 684 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 RNF25Q96BH1 459 aaPredicted RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 RBM15Q96T37 977 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 HPS4Q9NQG7 708 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 SH3BP4Q9P0V3 963 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 PHF2O75151 1096 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 RTN2O75298 545 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 UBXN2AP68543 259 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 PWP1Q13610 501 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 YAF2Q8IY57 180 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 CD209Q9NNX6 404 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 CLASP1Q7Z460 1538 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 BCL10O95999 233 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ESRP1Q6NXG1 681 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 OOSP2Q86WS3 158 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 TNIP3Q96KP6 325 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 SENP7Q9BQF6 1050 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 MRPL4Q9BYD3 311 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 BCL2L14Q9BZR8 327 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 DDX47Q9H0S4 455 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 COL17A1Q9UMD9 1497 aaPredicted RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF518AQ6AHZ1 1483 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 FTLP02792 175 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 BTBD8Q5XKL5 378 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 C4orf22Q6V702 233 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 CROCCP3Q8IVE0 287 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 IZUMO1Q8IYV9 350 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 PLEKHA5Q9HAU0 1116 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 FKBP14Q9NWM8 211 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 F5H423 210 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 LSP1P33241 339 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 STAT3P40763 770 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 PTK7Q13308 1070 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 LINC00523Q86TU6 105 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF560Q96MR9 790 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 RPS6KB2Q9UBS0 482 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SESN2P58004 480 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 PIGHQ14442 188 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 C11orf70Q9BRQ4 267 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SLITRK2Q9H156 845 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 MARCOQ9UEW3 520 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 RCOR1Q9UKL0 485 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 NUDT2P50583 147 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 CDC73Q6P1J9 531 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SVOPQ8N4V2 548 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 PCMTD2Q9NV79 361 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 CYP39A1Q9NYL5 469 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 EIF3LQ9Y262 564 aaKnown RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ANKRD12Q6UB98 2062 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 S100A6P06703 90 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 G2E3Q7L622 706 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SLC25A13Q9UJS0 675 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ATP9BO43861 1147 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 GYS1P13807 737 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SFNP31947 248 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 GUCY1A2P33402 732 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 BCAMP50895 628 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 C2CD6Q53TS8 623 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 DGKKQ5KSL6 1271 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ARMC6Q6NXE6 501 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 JADE3Q92613 823 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 VMP1Q96GC9 406 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SERPINB12Q96P63 405 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 CAMKK2Q96RR4 588 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 S100A1P23297 94 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF394Q53GI3 561 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 UBASH3BQ8TF42 649 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 BHMT2Q9H2M3 363 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 SPASTQ9UBP0 616 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ERVV-2B6SEH9 535 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 STX11O75558 287 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 USP13Q92995 863 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 MYH6P13533 1939 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ALOX15P16050 662 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 LGALS3BPQ08380 585 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 CENPLQ8N0S6 344 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 C6orf62Q9GZU0 229 aaPredicted RBP12.13□□□□□ -0.47
VPS13A-205ENST00000376636 PCSK1NQ9UHG2 260 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 LAMC3Q9Y6N6 1575 aa12.13□□□□□ -0.47
VPS13A-205ENST00000376636 ESYT3A0FGR9 886 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 MTSS1O43312 755 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 USP10Q14694 798 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 FRMD8Q9BZ67 464 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TRIM43BA6NCK2 446 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 CCT8L1PA6NM43 557 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 KRT34O76011 436 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 PKP1Q13835 747 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 MACC1Q6ZN28 852 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 DDX53Q86TM3 631 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 MNTQ99583 582 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 THUMPD3Q9BV44 507 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 LSM7Q9UK45 103 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 GDAQ9Y2T3 454 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 DYNC1LI2O43237 492 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TPP2P29144 1249 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 IREB2P48200 963 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 FAM83BQ5T0W9 1011 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TBC1D22BQ9NU19 505 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 GYG1P46976 350 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 PID1Q7Z2X4 250 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms