RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 MAP1SQ66K74 1059 aaPredicted RBP10.28□□□□□ -0.76
COL4A6-202ENST00000372216 C3orf67Q6ZVT6 689 aa10.28□□□□□ -0.76
COL4A6-202ENST00000372216 HPDLQ96IR7 371 aa10.28□□□□□ -0.76
COL4A6-202ENST00000372216 COLEC11Q9BWP8 271 aa10.28□□□□□ -0.76
COL4A6-202ENST00000372216 BFARQ9NZS9 450 aa10.28□□□□□ -0.76
COL4A6-202ENST00000372216 TBX20Q9UMR3 447 aa10.28□□□□□ -0.76
COL4A6-202ENST00000372216 PRG3Q9Y2Y8 225 aaPredicted RBP10.28□□□□□ -0.76
COL4A6-202ENST00000372216 COL5A2P05997 1499 aaPredicted RBP10.28□□□□□ -0.76
COL4A6-202ENST00000372216 ADM5C9JUS6 153 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 SERPINI2O75830 405 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 ARSEP51690 589 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 EPM2AIP1Q7L775 607 aaPredicted RBP10.27□□□□□ -0.76
COL4A6-202ENST00000372216 NUP93Q8N1F7 819 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 DAGLBQ8NCG7 672 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 PI4K2AQ9BTU6 479 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 SCUBE2Q9NQ36 999 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 PXMP2Q9NR77 195 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 PXDNQ92626 1479 aa10.27□□□□□ -0.76
COL4A6-202ENST00000372216 VTNP04004 478 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TAF6P49848 677 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 DEUP1Q05D60 604 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 SPARCL1Q14515 664 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 CASP8Q14790 479 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 IZUMO3Q5VZ72 239 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 LVRNQ6Q4G3 990 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 CDR2LQ86X02 465 aaPredicted RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 GSPT2Q8IYD1 628 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 SLC35G2Q8TBE7 412 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 HASPINQ8TF76 798 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 CPB2Q96IY4 423 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 FBXL21Q9UKT6 434 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 PPIEQ9UNP9 301 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ZDHHC9Q9Y397 364 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TAF6LQ9Y6J9 622 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 NWD1Q149M9 1564 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 PPLO60437 1756 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 HMGB1P1B2RPK0 211 aaPredicted RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TLR2O60603 784 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 PFDN1O60925 122 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ARHGEF7Q14155 803 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 SNCBQ16143 134 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 EMBQ6PCB8 327 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 PPP1R14AQ96A00 147 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TUBB6Q9BUF5 446 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 EFHD1Q9BUP0 239 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 RUSC1Q9BVN2 902 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 DDX47Q9H0S4 455 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 EHD4Q9H223 541 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 CYP4F11Q9HBI6 524 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 WDR35Q9P2L0 1181 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 MRPL42Q9Y6G3 142 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ZNF189O75820 626 aaPredicted RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 SUPT20HL2P0C7V6 817 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ACADSBP45954 432 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TARS2Q9BW92 718 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 PPARGC1AQ9UBK2 798 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 HPS5Q9UPZ3 1129 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ITIH6Q6UXX5 1313 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TTLL13PA6NNM8 815 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 MYO1GB0I1T2 1018 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 IMPDH2P12268 514 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 SLC16A1P53985 500 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 BTKQ06187 659 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 STK4Q13043 487 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 GLRA4Q5JXX5 417 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 C10orf120Q5SQS8 335 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 TDRD10Q5VZ19 366 aaKnown RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ANKMY2Q8IV38 441 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ARRDC4Q8NCT1 418 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 RUBCNLQ9H714 662 aa10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ABI2Q9NYB9 513 aaPredicted RBP10.27□□□□□ -0.77
COL4A6-202ENST00000372216 ZNF286BP0CG31 522 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 ESRRAP11474 423 aaPredicted RBP10.26□□□□□ -0.77
COL4A6-202ENST00000372216 KRT72Q14CN4 511 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 ADGRA1Q86SQ6 560 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 PABPC5Q96DU9 382 aaKnown RBP10.26□□□□□ -0.77
COL4A6-202ENST00000372216 CLMNQ96JQ2 1002 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.26□□□□□ -0.77
COL4A6-202ENST00000372216 TMX2Q9Y320 296 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 REREQ9P2R6 1566 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 PNPLA4P41247 253 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 CLCN6P51797 869 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 CCDC144BQ3MJ40 725 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 SEZ6Q53EL9 994 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 LRRC8EQ6NSJ5 796 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 TMEM117Q9H0C3 514 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 TUBE1Q9UJT0 475 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 AK9Q5TCS8 1911 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 GAS2O43903 313 aaKnown RBP10.26□□□□□ -0.77
COL4A6-202ENST00000372216 CTDNEP1O95476 244 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 ARP10275 920 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 GTF2H1P32780 548 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 BFSP2Q13515 415 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 ACAD11Q709F0 780 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 RD3Q7Z3Z2 195 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 ELMO2Q96JJ3 720 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 TSSK1BQ9BXA7 367 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 NFKBIZQ9BYH8 718 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 TRIM54Q9BYV2 358 aa10.26□□□□□ -0.77
COL4A6-202ENST00000372216 GLIS2Q9BZE0 524 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms