RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 KCNH2Q12809 1159 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 MTF1Q14872 753 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 RPAP3Q9H6T3 665 aaPredicted RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 PARVAQ9NVD7 372 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 HAO1Q9UJM8 370 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 DNMT1P26358 1616 aaKnown RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 DDHD2O94830 711 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 PCCAP05165 728 aaPredicted RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 RHOT1Q8IXI2 618 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 UBA6A0AVT1 1052 aaPredicted RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 NUDT2P50583 147 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 GPC3P51654 580 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 COX10Q12887 443 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 FAM83BQ5T0W9 1011 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 LRRC49Q8IUZ0 686 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 TRAPPC9Q96Q05 1148 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 CACNA2D2Q9NY47 1150 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 APOL1O14791 398 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 ZNF568Q3ZCX4 644 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 COBLL1Q53SF7 1204 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 IKBIPQ70UQ0 350 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 GTF3C2Q8WUA4 911 aaPredicted RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 SMAD5Q99717 465 aaKnown RBP13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 STON1Q9Y6Q2 735 aa13.78□□□□□ -0.2
SRGAP3-201ENST00000360413 SLC26A4O43511 780 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 CYP21A2P08686 494 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 USP39Q53GS9 565 aaKnown RBP13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 ZNF589Q86UQ0 364 aaPredicted RBP13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 XXYLT1Q8NBI6 393 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 C3orf20Q8ND61 904 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 CAPSLQ8WWF8 208 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 CYLDQ9NQC7 956 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 SUPT3HB4E1H0 165 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 MYL2P10916 166 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 SARSP49591 514 aaKnown RBP13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 SERPINH1P50454 418 aaKnown RBP13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 FAM196AQ6ZSG2 479 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 TAS2R42Q7RTR8 314 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 PSTPIP1O43586 416 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 PUDPQ08623 228 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 HIST2H2ACQ16777 129 aaPredicted RBP13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 HIST2H2AA3Q6FI13 130 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 RERGLQ9H628 205 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 PCMTD2Q9NV79 361 aa13.77□□□□□ -0.2
SRGAP3-201ENST00000360413 PEG3Q9GZU2 1588 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 TGM3Q08188 693 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 BTBD8Q5XKL5 378 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 SCUBE1Q8IWY4 988 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 KATNAL1Q9BW62 490 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 HDHD2Q9H0R4 259 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 HPS4Q9NQG7 708 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 DKK3Q9UBP4 350 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 AFF4Q9UHB7 1163 aaKnown RBP13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 KDM5CP41229 1560 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 USP17L3A6NCW0 530 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 USP17L4A6NCW7 530 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 TALDO1P37837 337 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 SLC1A1P43005 524 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 BCAMP50895 628 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 RCSD1Q6JBY9 416 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 TMEM179Q6ZVK1 233 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 UNC13DQ70J99 1090 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 USP17L1Q7RTZ2 530 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 ATL2Q8NHH9 583 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 CDY2AQ9Y6F7 541 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 CDY1Q9Y6F8 540 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 PHF2O75151 1096 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 ECDO95905 644 aaPredicted RBP13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 CROCCP3Q8IVE0 287 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 MED15Q96RN5 788 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 RBM15Q96T37 977 aaKnown RBP eCLIP13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 MTERF2Q49AM1 385 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 IZUMO2Q6UXV1 221 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 FOXP4Q8IVH2 680 aaPredicted RBP13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 CARD14Q9BXL6 1004 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 BSDC1Q9NW68 430 aaPredicted RBP13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 STAP2Q9UGK3 403 aa13.77□□□□□ -0.21
SRGAP3-201ENST00000360413 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 H3BMM5 538 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 LSM1O15116 133 aaKnown RBP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 CNTN1Q12860 1018 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 DALRD3Q5D0E6 543 aaKnown RBP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 PDZK1Q5T2W1 519 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 VPS33AQ96AX1 596 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 WNK4Q96J92 1243 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 PTPN12Q05209 780 aaKnown RBP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 PPIDQ08752 370 aaKnown RBP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 TRIQKQ629K1 86 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 UNC5CLQ8IV45 518 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 DPP10Q8N608 796 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 OSBPL6Q9BZF3 934 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 SLC38A7Q9NVC3 462 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 RIC8BQ9NVN3 520 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 ZNF862O60290 1169 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 UBXN2AP68543 259 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 MTMR1Q13613 665 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 TRIM51Q9BSJ1 452 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 FEM1BQ9UK73 627 aa13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 SF3B1O75533 1304 aaKnown RBP eCLIP13.76□□□□□ -0.21
SRGAP3-201ENST00000360413 CEBPAP49715 358 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms