RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FBXO41Q8TF61 875 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 OSBPL8Q9BZF1 889 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 DCLK3Q9C098 648 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 CDC42EP4Q9H3Q1 356 aaKnown RBP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 RNF19AQ9NV58 838 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 TBK1Q9UHD2 729 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 SLC12A6Q9UHW9 1150 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 PPP2R3BQ9Y5P8 575 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 RIPK2O43353 540 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ZSCAN5DPP0CG00 497 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ETS1P14921 441 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 EDNRBP24530 442 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 CDR1P51861 262 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 TAX1BP1Q86VP1 789 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF677Q86XU0 584 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 OPTNQ96CV9 577 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 MRRFQ96E11 262 aaKnown RBP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 CPB2Q96IY4 423 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ADAM33Q9BZ11 813 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 LRRC19Q9H756 370 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 AVENQ9NQS1 362 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 KCNG1Q9UIX4 513 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 IVNS1ABPQ9Y6Y0 642 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ZBTB42B2RXF5 422 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 OGTO15294 1046 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ITGBL1O95965 494 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ASS1P00966 412 aaKnown RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 PIGRP01833 764 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 KRT1P04264 644 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 TBXAS1P24557 533 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 FNTAP49354 379 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CORO7P57737 925 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 LRRC14Q15048 493 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CYP1B1Q16678 543 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 DUOXA2Q1HG44 320 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 WDR72Q3MJ13 1102 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CELF3Q5SZQ8 465 aaKnown RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ATF7IP2Q5U623 682 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF365Q70YC5 407 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 RHOT1Q8IXI2 618 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 GLIS1Q8NBF1 620 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 FEZF2Q8TBJ5 459 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ART4Q93070 314 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 C9orf72Q96LT7 481 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 TMEM134Q9H6X4 195 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ADARB2Q9NS39 739 aaKnown RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 SAE1Q9UBE0 346 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 RASGRF2O14827 1237 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 IQCF3P0C7M6 154 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 MYBL1P10243 752 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ATF2P15336 505 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CHN1P15882 459 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 GJA5P36382 358 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 DRG2P55039 364 aaKnown RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 PLCB3Q01970 1234 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 OGDHQ02218 1023 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 KCNT1Q5JUK3 1230 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 AGBL2Q5U5Z8 902 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 IER5Q5VY09 327 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 DNAJC24Q6P3W2 148 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 TRIM11Q96F44 468 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ZWILCHQ9H900 591 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 MRPL47Q9HD33 250 aaKnown RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 IFNB1P01574 187 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 VTNP04004 478 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CREB1P16220 341 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 LACTBP83111 547 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-201ENST00000341247 CYP4F22Q6NT55 531 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 MFSD7Q6UXD7 560 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 B4GALNT4Q76KP1 1039 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ERO1BQ86YB8 467 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 AAASQ9NRG9 546 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 PARP2Q9UGN5 583 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 ANAPC5Q9UJX4 755 aa10.97□□□□□ -0.65
LIMA1-201ENST00000341247 A0A0G2JLL6 359 aaPredicted RBP10.96□□□□□ -0.65
LIMA1-201ENST00000341247 LRRD1A4D1F6 860 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 GMNCA6NCL1 334 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 GAS8O95995 478 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF286BP0CG31 522 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 SLC1A1P43005 524 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 EIF3BP55884 814 aaKnown RBP10.96□□□□□ -0.65
LIMA1-201ENST00000341247 PRRT2Q7Z6L0 340 aaPredicted RBP10.96□□□□□ -0.65
LIMA1-201ENST00000341247 WDR49Q8IV35 697 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 EMC1Q8N766 993 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 CDCA5Q96FF9 252 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 NIF3L1Q9GZT8 377 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 PARVAQ9NVD7 372 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 AKT3Q9Y243 479 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 TP73O15350 636 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 FAM189A1O60320 539 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 KIAA0754O94854 1291 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 NFICP08651 508 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 TGFB3P10600 412 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 EFNA5P52803 228 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 PTP4A2Q12974 167 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 ZPBP2Q6X784 338 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 CPLX4Q7Z7G2 160 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 ERICH1Q86X53 443 aa10.96□□□□□ -0.65
LIMA1-201ENST00000341247 UPF1Q92900 1129 aaKnown RBP eCLIP10.96□□□□□ -0.65
LIMA1-201ENST00000341247 FAM81BQ96LP2 452 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms