RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 EFCAB8A8MWE9 144 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 EEF2KO00418 725 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 PSMD3O43242 534 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 RTN3O95197 1032 aaPredicted RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 PDGFRAP16234 1089 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 AVPR1AP37288 418 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 MDH1BQ5I0G3 518 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 JADE1Q6IE81 842 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 MAP4K3Q8IVH8 894 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 ASAP3Q8TDY4 903 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 PNMA5Q96PV4 448 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 CBWD1Q9BRT8 395 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 A0A1W2PQJ5 194 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 PPP1R3GB7ZBB8 358 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 NCAM1P13591 858 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 LAG3P18627 525 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 BRD2P25440 801 aaKnown RBP10.72□□□□□ -0.69
USP54-201ENST00000339859 IFNAR2P48551 515 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 CPA5Q8WXQ8 436 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 ST3GAL5Q9UNP4 418 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 HEY1Q9Y5J3 304 aa10.72□□□□□ -0.69
USP54-201ENST00000339859 SF3B1O75533 1304 aaKnown RBP eCLIP10.72□□□□□ -0.693e-6■■■■■ 160.8
USP54-201ENST00000339859 CSDE1O75534 798 aaKnown RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 CD52P31358 61 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 TUFMP49411 452 aaKnown RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 ROR1Q01973 937 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 RABGAP1LQ5R372 815 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 RNF187Q5TA31 235 aaPredicted RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 FBXO44Q9H4M3 255 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 TMEM51Q9NW97 253 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 ANGPTL3Q9Y5C1 460 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 THSD7AQ9UPZ6 1657 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 SOWAHBA6NEL2 793 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 LACTBL1A8MY62 500 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 GMNNO75496 209 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 PALMO75781 387 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 GRB14Q14449 540 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 CLEC4DQ8WXI8 215 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 RNPC3Q96LT9 517 aaKnown RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 SMC6Q96SB8 1091 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 SYT15Q9BQS2 421 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 IRAK4Q9NWZ3 460 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 TACC3Q9Y6A5 838 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 MAP3K7O43318 606 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 CDH6P55285 790 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 ETF1P62495 437 aaKnown RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 TSTA3Q13630 321 aaPredicted RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 DLK2Q6UY11 383 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 RAPH1Q70E73 1250 aa10.71□□□□□ -0.69
USP54-201ENST00000339859 OLA1Q9NTK5 396 aaKnown RBP10.71□□□□□ -0.69
USP54-201ENST00000339859 INHBAP08476 426 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 GLRA2P23416 452 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 BCAR1P56945 870 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 FMR1Q06787 632 aaKnown RBP eCLIP10.71□□□□□ -0.7
USP54-201ENST00000339859 BRSK2Q8IWQ3 736 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 VPS52Q8N1B4 723 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 ATPAF2Q8N5M1 289 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.71□□□□□ -0.7
USP54-201ENST00000339859 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.71□□□□□ -0.7
USP54-201ENST00000339859 GRIK3Q13003 919 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 ABHD15Q6UXT9 468 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 MMS22LQ6ZRQ5 1243 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 CHSY1Q86X52 802 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 RCOR2Q8IZ40 523 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 RNF10Q8N5U6 811 aaKnown RBP10.71□□□□□ -0.7
USP54-201ENST00000339859 FBXO22Q8NEZ5 403 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 FAM76AQ8TAV0 307 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 UBE2OQ9C0C9 1292 aaKnown RBP10.71□□□□□ -0.7
USP54-201ENST00000339859 SLC25A13Q9UJS0 675 aa10.71□□□□□ -0.7
USP54-201ENST00000339859 A0A1B0GTH6 734 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 SAT1P21673 171 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 MLH1P40692 756 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 EARS2Q5JPH6 523 aaKnown RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 KLHDC7AQ5VTJ3 777 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 IL31Q6EBC2 164 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 ACOT1Q86TX2 421 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 CCDC13Q8IYE1 715 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 AFAP1L1Q8TED9 768 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 FAM107BQ9H098 131 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 PI4K2BG5E9Z4 385 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 PSRC1Q6PGN9 363 aaPredicted RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 HELQQ8TDG4 1101 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 TMEM176AQ96HP8 235 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 TSEN34Q9BSV6 310 aaKnown RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 PCDHA2Q9Y5H9 948 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 TTC26A0AVF1 554 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 F5H5T6 163 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 AP3B1O00203 1094 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 RECQL4O94761 1208 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 VEGFBP49765 207 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 PSMD6Q15008 389 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 DCAF6Q58WW2 860 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 PPP4R1Q8TF05 950 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 SMARCD1Q96GM5 515 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 MMTAG2Q9BU76 263 aaKnown RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 PFDN4Q9NQP4 134 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 MORF4L1Q9UBU8 362 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 FHOD1Q9Y613 1164 aa10.7□□□□□ -0.7
USP54-201ENST00000339859 RPL9P32969 192 aaKnown RBP10.7□□□□□ -0.7
USP54-201ENST00000339859 BST2Q10589 180 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms