RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SYN3O14994 580 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 AP5Z1O43299 807 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 FGFR3P22607 806 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 DNAJB1P25685 340 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 ASPAP45381 313 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 SYCP1Q15431 976 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 PTPN21Q16825 1174 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 UVSSAQ2YD98 709 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 PHLDB3Q6NSJ2 640 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 DPY19L2P1Q6NXN4 242 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.77■■□□□ 1.4
SDC3-202ENST00000339394 DPH6Q7L8W6 267 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 TOP6BLQ8N6T0 577 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 APPL2Q8NEU8 664 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 NT5C1BQ96P26 610 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 TTPALQ9BTX7 342 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 XPO4Q9C0E2 1151 aaKnown RBP23.77■■□□□ 1.4
SDC3-202ENST00000339394 NIF3L1Q9GZT8 377 aa23.77■■□□□ 1.4
SDC3-202ENST00000339394 TTYH1Q9H313 450 aaPredicted RBP23.77■■□□□ 1.4
SDC3-202ENST00000339394 SCN1AP35498 2009 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 KLK7P49862 253 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 CAMK1Q14012 370 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 RTP2Q5QGT7 225 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 WSCD1Q658N2 575 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 SARM1Q6SZW1 724 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 SCARA5Q6ZMJ2 495 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 PDCL2Q8N4E4 241 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 FAXDC2Q96IV6 333 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 SMYD3Q9H7B4 428 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 SIK3Q9Y2K2 1263 aa23.76■■□□□ 1.39
SDC3-202ENST00000339394 KIAA1671Q9BY89 1806 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 ARHGEF37A1IGU5 675 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 RFXAPO00287 272 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 CYP11A1P05108 521 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 TYMPP19971 482 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 CDH8P55286 799 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 ERVFC1P60507 584 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 HABP4Q5JVS0 413 aaKnown RBP23.75■■□□□ 1.39
SDC3-202ENST00000339394 KIAA1841Q6NSI8 718 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 RRAGAQ7L523 313 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 ARHGEF19Q8IW93 802 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 PPM1KQ8N3J5 372 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 GDPD5Q8WTR4 605 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 ARID3AQ99856 593 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 HERC2P3Q9BVR0 1158 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 BCO2Q9BYV7 579 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 ZBP1Q9H171 429 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 SIX2Q9NPC8 291 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 APEX2Q9UBZ4 518 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 DSEQ9UL01 958 aa23.75■■□□□ 1.39
SDC3-202ENST00000339394 WEE2P0C1S8 567 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 DSG1Q02413 1049 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 CUL2Q13617 745 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 VARS2Q5ST30 1063 aaKnown RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 KIAA0319Q5VV43 1072 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 TMC7Q7Z402 723 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 KBTBD7Q8WVZ9 684 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 TCF25Q9BQ70 676 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 LSM14BQ9BX40 385 aaKnown RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 TLR9Q9NR96 1032 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 C2CD2LO14523 706 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 CBFA2T2O43439 604 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 TACC1O75410 805 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 CSPG5O95196 566 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 TPM3P06753 285 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 CTSAP10619 480 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 RAP1GAPP47736 663 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 GLUD2P49448 558 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 GCNT1Q02742 428 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 YWHAHQ04917 246 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 KLHDC7AQ5VTJ3 777 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 GJB7Q6PEY0 223 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 ADGRF2Q8IZF7 708 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 TMEM86AQ8N2M4 240 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 LNX1Q8TBB1 728 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 RIN2Q8WYP3 895 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 PCMTD1Q96MG8 357 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 MRPL45Q9BRJ2 306 aaKnown RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 SDCBP2Q9H190 292 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 UBE2TQ9NPD8 197 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 PLCB1Q9NQ66 1216 aa23.74■■□□□ 1.39
SDC3-202ENST00000339394 FAM207AQ9NSI2 230 aaPredicted RBP23.74■■□□□ 1.39
SDC3-202ENST00000339394 A0A1W2PQC6 194 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 LPXNO60711 386 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 OAZ2O95190 189 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 URODP06132 367 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 TBXAS1P24557 533 aaPredicted RBP23.73■■□□□ 1.39
SDC3-202ENST00000339394 MRPL58Q14197 206 aaKnown RBP23.73■■□□□ 1.39
SDC3-202ENST00000339394 OVOS1Q6IE37 1185 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 METTL23Q86XA0 190 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 AUTS2Q8WXX7 1259 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 KAT5Q92993 513 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 TRIM5Q9C035 493 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 CYP3A43Q9HB55 503 aa23.73■■□□□ 1.39
SDC3-202ENST00000339394 TRANK1O15050 2925 aa23.72■■□□□ 1.39
SDC3-202ENST00000339394 GABRDO14764 452 aa23.72■■□□□ 1.39
SDC3-202ENST00000339394 FAM163BP0C2L3 166 aa23.72■■□□□ 1.39
SDC3-202ENST00000339394 PBX1P40424 430 aa23.72■■□□□ 1.39
SDC3-202ENST00000339394 PRSS55Q6UWB4 352 aaPredicted RBP23.72■■□□□ 1.39
SDC3-202ENST00000339394 PIK3R5Q8WYR1 880 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms