RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 XKR4Q5GH76 650 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NAA35Q5VZE5 725 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 PHLDB2Q86SQ0 1253 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CD302Q8IX05 232 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ZNF710Q8N1W2 664 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 RNF169Q8NCN4 708 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 GSTCDQ8NEC7 633 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 SLC35G2Q8TBE7 412 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CPA5Q8WXQ8 436 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 RABGGTAQ92696 567 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 TAF4BQ92750 862 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CYFIP2Q96F07 1278 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NOX5Q96PH1 765 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 GAD1Q99259 594 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CARD6Q9BX69 1037 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.42□□□□□ -1.7
MCF2-201ENST00000338585 PACSIN2Q9UNF0 486 aaPredicted RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 COG5Q9UP83 839 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 MRFAP1Q9Y605 127 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 V9GYY5 206 aaPredicted RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 PDCD11Q14690 1871 aaKnown RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 ANKRD62A6NC57 917 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 SPDYE4A6NLX3 237 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 BTNL10A8MVZ5 291 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 DNM1LO00429 736 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ZNF185O15231 689 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 HCRTO43612 131 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 RTN2O75298 545 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 UNGP13051 313 aaPredicted RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 KCNE1P15382 129 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ATF7P17544 494 aaPredicted RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 CXCR5P32302 372 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 DNA2P51530 1060 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 RAD23BP54727 409 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 DSC3Q14574 896 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CLEC16AQ2KHT3 1053 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 FAM26DQ5JW98 314 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 C9orf57Q5W0N0 161 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ACAD10Q6JQN1 1059 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 AGMOQ6ZNB7 445 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NT5DC4Q86YG4 428 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 RNF10Q8N5U6 811 aaKnown RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 BEST2Q8NFU1 509 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 TRIM58Q8NG06 486 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 TPCN2Q8NHX9 752 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ZNF606Q8WXB4 792 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CTNNBL1Q8WYA6 563 aaPredicted RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 MMS19Q96T76 1030 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ADAM2Q99965 735 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 TLR10Q9BXR5 811 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ELOVL4Q9GZR5 314 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 PDCL3Q9H2J4 239 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 VRTNQ9H8Y1 702 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 CHST12Q9NRB3 414 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 MIOSQ9NXC5 875 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 INTUQ9ULD6 942 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 UBQLN1Q9UMX0 589 aaKnown RBP4.42□□□□□ -1.7
MCF2-201ENST00000338585 DERAQ9Y315 318 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 HYOU1Q9Y4L1 999 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NME7Q9Y5B8 376 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 PCDHGC5Q9Y5F6 944 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 NCANO14594 1321 aa4.42□□□□□ -1.7
MCF2-201ENST00000338585 ANO9A1A5B4 782 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 BUB1BO60566 1050 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 CILPO75339 1184 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CYP1A1P04798 512 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 GZMAP12544 262 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ITGA4P13612 1032 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CD19P15391 556 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ZSCAN20P17040 1043 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 ATICP31939 592 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CDK7P50613 346 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 BPIFB4P59827 614 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 C1QTNF8P60827 252 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 TNNC1P63316 161 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 GPNMBQ14956 572 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 PAPD7Q5XG87 772 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 DENND1BQ6P3S1 775 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 RTN4RL1Q86UN2 441 aaPredicted RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 CPNE8Q86YQ8 564 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 FAM126BQ8IXS8 530 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 TXLNBQ8N3L3 684 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 DNAJC5GQ8N7S2 189 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 LRRC57Q8N9N7 239 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 SLC4A11Q8NBS3 891 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 COG1Q8WTW3 980 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 LINC01599Q8WXQ3 324 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 RFFLQ8WZ73 363 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ZNF653Q96CK0 615 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CAPZA3Q96KX2 299 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ALS2CR12Q96Q35 445 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 PPP1R10Q96QC0 940 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 LPIN3Q9BQK8 851 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 MRPL45Q9BRJ2 306 aaKnown RBP4.41□□□□□ -1.7
MCF2-201ENST00000338585 SMARCAL1Q9NZC9 954 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 CDC23Q9UJX2 597 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 OGDHLQ9ULD0 1010 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 JRKLQ9Y4A0 524 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 SNX9Q9Y5X1 595 aa4.41□□□□□ -1.7
MCF2-201ENST00000338585 ATP8B3O60423 1300 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms