RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SCFD2Q8WU76 684 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 IFT43Q96FT9 208 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 GOLPH3Q9H4A6 298 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 MAD2L2Q9UI95 211 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 PCDHB8Q9UN66 801 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 CNTNAP4Q9C0A0 1308 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 TIMM44O43615 452 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 HOXC6P09630 235 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NKX1-1Q15270 411 aaPredicted RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 Q4G0T1 1027 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 ANLNQ9NQW6 1124 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC38A7Q9NVC3 462 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NCAM2O15394 837 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 PSMA4P25789 261 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 CARSP49589 748 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NCOA4Q13772 614 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 SH2D3CQ8N5H7 860 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 CHCHD3Q9NX63 227 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 COBLL1Q53SF7 1204 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 RNF25Q96BH1 459 aaPredicted RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NIF3L1Q9GZT8 377 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 XRN1Q8IZH2 1706 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 ZMYM2Q9UBW7 1377 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 CD4P01730 458 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 BAG6P46379 1132 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ZC4H2Q9NQZ6 224 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 SYNJ2BP-COX16A0A087WUM0 186 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 MAP2K7O14733 419 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 KCNN4O15554 427 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CYP2D6P10635 497 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 COMTP21964 271 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ITGA8P53708 1063 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PTK6Q13882 451 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 C7orf31Q8N865 590 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ZNF398Q8TD17 642 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CASKIN2Q8WXE0 1202 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 COX16Q9P0S2 106 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TTC7AQ9ULT0 858 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 EFCAB14O75071 495 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PRMT9Q6P2P2 845 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 FBXO33Q7Z6M2 555 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 GCNAQ96QF7 691 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 IRX2Q9BZI1 471 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 LIN7AO14910 233 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 GARTP22102 1010 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PON1P27169 355 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ERVK-24P63145 666 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CDO1Q16878 200 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 SCARA5Q6ZMJ2 495 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 C3orf62Q6ZUJ4 267 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 OR6B3Q8NGW1 331 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 INPP5DQ92835 1189 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 THAP11Q96EK4 314 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 EHD4Q9H223 541 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TUBGCP4Q9UGJ1 667 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 APRTP07741 180 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIM49P0CI25 452 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIM49CP0CI26 452 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TKTP29401 623 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 DUOX1Q9NRD9 1551 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 C19orf81C9J6K1 198 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CYP26A1O43174 497 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 HNRNPCP07910 306 aaKnown RBP eCLIP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PNPLA4P41247 253 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PP2D1A8MPX8 630 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 SKIV2L2P42285 1042 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 NAA20P61599 178 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ACAD10Q6JQN1 1059 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 RWDD4Q6NW29 188 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ZBTB33Q86T24 672 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TTLL6Q8N841 843 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 GABBR1Q9UBS5 961 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PTPN4P29074 926 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PRAMEP78395 509 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TMTC4Q5T4D3 741 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 ZNF772Q68DY9 489 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CATSPER4Q7RTX7 472 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIM69Q86WT6 500 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 PASD1Q8IV76 773 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 CCDC28BQ9BUN5 200 aa10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 BAZ2AQ9UIF9 1905 aaKnown RBP10.76□□□□□ -0.69
CCDC88A-202ENST00000336838 SETD1AO15047 1707 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 ASB14A6NK59 587 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 LONRF1Q17RB8 773 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC10A5Q5PT55 438 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 HIC2Q96JB3 615 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 E5RI56 91 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 F8VZ95 297 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 KLRC1P26715 233 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 SNRNP48Q6IEG0 339 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 PRPF39Q86UA1 669 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 FEZF2Q8TBJ5 459 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 E2F7Q96AV8 911 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 BRD8Q9H0E9 1235 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 SERPINB8P50452 374 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 ZNF135P52742 658 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 HK2P52789 917 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 EPHB1P54762 984 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 IMPG1Q17R60 797 aa10.75□□□□□ -0.69
CCDC88A-202ENST00000336838 FASTKD1Q53R41 847 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms