RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CRIPAKQ8N1N5 446 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 RNF10Q8N5U6 811 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 DBF4BQ8NFT6 615 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 ATRIPQ8WXE1 791 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 LPPQ93052 612 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 DDX27Q96GQ7 796 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 PAWRQ96IZ0 340 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 UROC1Q96N76 676 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 SDCBP2Q9H190 292 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 SMYD3Q9H7B4 428 aa15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 NXF1Q9UBU9 619 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 BARX2Q9UMQ3 279 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-202ENST00000334448 KIAA0355O15063 1070 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 KIF5CO60282 957 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 LSM8O95777 96 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 CYP1A1P04798 512 aaPredicted RBP15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 H2AFZP0C0S5 128 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 WEE2P0C1S8 567 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 TNNT1P13805 278 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 GNA15P30679 374 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 SCNN1GP51170 649 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 LRRC26Q2I0M4 334 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 GLB1LQ6UWU2 654 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 SCARA5Q6ZMJ2 495 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 H2AFVQ71UI9 128 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 UNC93AQ86WB7 457 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 PALB2Q86YC2 1186 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM130Q8N3G9 435 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 TOP6BLQ8N6T0 577 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 SPATA18Q8TC71 538 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 WHAMMQ8TF30 809 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 PCDHB18PQ96TA0 734 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 LZTFL1Q9NQ48 299 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 RNF19AQ9NV58 838 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 MIOSQ9NXC5 875 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 KIAA1257Q9ULG3 409 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 PCDHGC3Q9UN70 934 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 NCANO14594 1321 aa15.93■□□□□ 0.14
CCDC88C-202ENST00000334448 ANKRD62A6NC57 917 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 KPNA7A9QM74 516 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 ENPP3O14638 875 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 SPTLC1O15269 473 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 RTN2O75298 545 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 CAPN15O75808 1086 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 MMEP08473 750 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM253P0C7T8 217 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 CDH5P33151 784 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 AFF1P51825 1210 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 RAD23BP54727 409 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 LILRA4P59901 499 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 DSC1Q08554 894 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 TUSC3Q13454 348 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 CLEC16AQ2KHT3 1053 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 VWCEQ96DN2 955 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 CALR3Q96L12 384 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 MCOLN1Q9GZU1 580 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 ACP6Q9NPH0 428 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 ATP11BQ9Y2G3 1177 aa15.92■□□□□ 0.14
CCDC88C-202ENST00000334448 PODXLO00592 558 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 HOXA2O43364 376 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 UNGP13051 313 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 CD58P19256 250 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 HADHBP55084 474 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 CENPCQ03188 943 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 UPP1Q16831 310 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 SOWAHAQ2M3V2 549 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 CLLU1OSQ5K130 101 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 SLC4A11Q8NBS3 891 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 ZNF606Q8WXB4 792 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM176AQ96HP8 235 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 ZNF518BQ9C0D4 1074 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 ELOVL4Q9GZR5 314 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 GOLGA2P5Q9HBQ8 144 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM39AQ9NV64 488 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 KANSL3Q9P2N6 904 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 SNX9Q9Y5X1 595 aa15.91■□□□□ 0.14
CCDC88C-202ENST00000334448 TMEM189-UBE2V1I3L0A0 370 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 CLSTN1O94985 981 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 ABL1P00519 1130 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 WARSP23381 471 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 CYP2C18P33260 490 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 RAP1GAPP47736 663 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 GALCP54803 685 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 CDH8P55286 799 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 NOMO3P69849 1222 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 STILQ15468 1287 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 TCTN1Q2MV58 587 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 NOMO2Q5JPE7 1267 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 TAF3Q5VWG9 929 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 ACAD10Q6JQN1 1059 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 CNKSR3Q6P9H4 555 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 URGCPQ8TCY9 931 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 KBTBD7Q8WVZ9 684 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 SECISBP2LQ93073 1101 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 SCLYQ96I15 445 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 TWNKQ96RR1 684 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 ZSWIM1Q9BR11 485 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 NT5C1AQ9BXI3 368 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 PACSIN1Q9BY11 444 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms