RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 KCNJ1P48048 391 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ITIH4Q14624 930 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 NKX1-1Q15270 411 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 FAM213AQ9BRX8 229 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ZSWIM5Q9P217 1185 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 PPIDQ08752 370 aaKnown RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 SEMA6AQ9H2E6 1030 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ADGRA3Q8IWK6 1321 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 DGKHQ86XP1 1220 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 PTPRN2Q92932 1015 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 FUT8Q9BYC5 575 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 IP6K2Q9UHH9 426 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ITGAXP20702 1163 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 PCSK7Q16549 785 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 FAM45BPQ6NSW5 357 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 QKIQ96PU8 341 aaKnown RBP eCLIP9.12□□□□□ -0.95
USF3-201ENST00000316407 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 TRAPPC8Q9Y2L5 1435 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 LCP1P13796 627 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 CSE1LP55060 971 aaKnown RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 SCARA3Q6AZY7 606 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ACSF2Q96CM8 615 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 ZNF668Q96K58 619 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 FAM187AA6NFU0 413 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 P4HA2O15460 535 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 PEX1O43933 1283 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 ZNF682O95780 498 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 NEK10Q6ZWH5 1172 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 TERB1Q8NA31 727 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 TBC1D22AQ8WUA7 517 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 CDY2AQ9Y6F7 541 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 CDY1Q9Y6F8 540 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 EDC4Q6P2E9 1401 aaKnown RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 FAM58BPP0C7Q3 252 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 NUP62P37198 522 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 LARGE2Q8N3Y3 721 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 RAD54LQ92698 747 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 TRPC7Q9HCX4 862 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 RAB6BQ9NRW1 208 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 CYP26A1O43174 497 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 KLHL2O95198 593 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 PSMB9P28065 219 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 SHROOM1Q2M3G4 852 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 THNSL1Q8IYQ7 743 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 RMDN1Q96DB5 314 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 MAGEB5Q9BZ81 275 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 K7ERI5 159 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 MOCS2O96007 188 aaPredicted RBP9.12□□□□□ -0.95
USF3-201ENST00000316407 POU1F1P28069 291 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 OTOAQ7RTW8 1153 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 JAMLQ86YT9 394 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 TTC13Q8NBP0 860 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 GREM2Q9H772 168 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 FANCEQ9HB96 536 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 BABAM1Q9NWV8 329 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 DUSP10Q9Y6W6 482 aa9.12□□□□□ -0.95
USF3-201ENST00000316407 CACNA1FO60840 1977 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 OR6B3Q8NGW1 331 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 HES6Q96HZ4 224 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 RAG1P15918 1043 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CHRNDQ07001 517 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CCDC33Q8N5R6 958 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SNX31Q8N9S9 440 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SLC10A4Q96EP9 437 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CAPN10Q9HC96 672 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 INTS13Q9NVM9 706 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PLEKP08567 350 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 AASDHQ4L235 1098 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 DEFB107AQ8IZN7 70 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L15C9J2P7 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L13C9JLJ4 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L11C9JVI0 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L18D6R9N7 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L22D6RA61 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L17D6RBQ6 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L19D6RCP7 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L20D6RJB6 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 KRT76Q01546 638 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CACNB2Q08289 660 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 USP17L24Q0WX57 530 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SHC4Q6S5L8 630 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CLVS1Q8IUQ0 354 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 NDUFAF2Q8N183 169 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ATL2Q8NHH9 583 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 C19orf60Q96EN9 201 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 RMND5BQ96G75 393 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 GCNAQ96QF7 691 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ECSITQ9BQ95 431 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 EURLQ9NYK6 297 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 BIVM-ERCC5R4GMW8 1640 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 EPHB2P29323 1055 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SPANXN2Q5MJ10 180 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 METTL23Q86XA0 190 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 QRICH2Q9H0J4 1663 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ASPRV1Q53RT3 343 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 OTUD3Q5T2D3 398 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 TMEM63BQ5T3F8 832 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 CCDC80Q76M96 950 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 DDX50Q9BQ39 737 aaKnown RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 GORASP1Q9BQQ3 440 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms