RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 GTF2IRD1Q9UHL9 959 aa12.68□□□□□ -0.38
TRIM40-205ENST00000307859 ITGA11Q9UKX5 1188 aa12.68□□□□□ -0.38
TRIM40-205ENST00000307859 KCNK3O14649 394 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 DDX3YO15523 660 aaKnown RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 ATMINO43313 823 aaPredicted RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 THAP12O43422 761 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 PGK1P00558 417 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 KRT19P08727 400 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 BRD3Q15059 726 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 NAA35Q5VZE5 725 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 MON1BQ7L1V2 547 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 PHF13Q86YI8 300 aaPredicted RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 MCOLN2Q8IZK6 566 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 ZNF564Q8TBZ8 553 aaPredicted RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 ZNF606Q8WXB4 792 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 MS4A14Q96JA4 679 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 PNKPQ96T60 521 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 NUP85Q9BW27 656 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 EIF2AQ9BY44 585 aaKnown RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 FAM124BQ9H5Z6 455 aaPredicted RBP12.67□□□□□ -0.38
TRIM40-205ENST00000307859 EHD2Q9NZN4 543 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 POLIQ9UNA4 740 aa12.67□□□□□ -0.38
TRIM40-205ENST00000307859 FAM170AA1A519 330 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 TARSL2A2RTX5 802 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CCDC151A5D8V7 595 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CFHP08603 1231 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 WEE2P0C1S8 567 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 RHOXF2BP0C7M4 288 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CD58P19256 250 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CST5P28325 142 aaPredicted RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 NSFP46459 744 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 DNA2P51530 1060 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 WDR93Q6P2C0 686 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CXCL17Q6UXB2 119 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SCARA5Q6ZMJ2 495 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SESTD1Q86VW0 696 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 RASGEF1CQ8N431 466 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 KLHDC9Q8NEP7 349 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ACTRT1Q8TDG2 376 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CYFIP2Q96F07 1278 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 VCPIP1Q96JH7 1222 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 RPS6KC1Q96S38 1066 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 RHOXF2Q9BQY4 288 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 UNC93B1Q9H1C4 597 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CYP3A43Q9HB55 503 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 DPP3Q9NY33 737 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SMARCAL1Q9NZC9 954 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CNOT8Q9UFF9 292 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 MIF4GDA9UHW6 222 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 LSM8O95777 96 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CCND3P30281 292 aaPredicted RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 POLR2BP30876 1174 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CDH5P33151 784 aaPredicted RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 MRPS6P82932 125 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 RBP5P82980 135 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ZBTB6Q15916 424 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 PTPROQ16827 1216 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 NBPF20Q3BBV1 942 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 UBXN11Q5T124 520 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ALKAL1Q6UXT8 129 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 TMEM130Q8N3G9 435 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CPA5Q8WXQ8 436 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 KIF12Q96FN5 646 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ZSWIM1Q9BR11 485 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SELENOOQ9BVL4 669 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CELF4Q9BZC1 486 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CRISPLD2Q9H0B8 497 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SDCBP2Q9H190 292 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 PDCL3Q9H2J4 239 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 XPNPEP3Q9NQH7 507 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ZNF446Q9NWS9 450 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 SNTG2Q9NY99 539 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 CNTN3Q9P232 1028 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 NXF1Q9UBU9 619 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 TMEM59LQ9UK28 342 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 TTC7AQ9ULT0 858 aaPredicted RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 PCDHGC3Q9UN70 934 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 PIN4Q9Y237 131 aaKnown RBP12.66□□□□□ -0.38
TRIM40-205ENST00000307859 ALG6Q9Y672 507 aa12.66□□□□□ -0.38
TRIM40-205ENST00000307859 TDRD15B5MCY1 1934 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 ZRANB2O95218 330 aaKnown RBP eCLIP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 PAEPP09466 180 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 P4HA1P13674 534 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 BRD2P25440 801 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 YARSP54577 528 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 C1QBPQ07021 282 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 PTP4A2Q12974 167 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 WDR72Q3MJ13 1102 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 MAP3K21Q5TCX8 1036 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 CCSAPQ6IQ19 270 aaPredicted RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 GDF6Q6KF10 455 aaPredicted RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 CC2D1AQ6P1N0 951 aaPredicted RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 NECAB2Q7Z6G3 386 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 RPAINQ86UA6 219 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 SERINC5Q86VE9 423 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 USP38Q8NB14 1042 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 HNRNPLLQ8WVV9 542 aaKnown RBP12.65□□□□□ -0.38
TRIM40-205ENST00000307859 RUBCNQ92622 972 aa12.65□□□□□ -0.38
TRIM40-205ENST00000307859 HPDLQ96IR7 371 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms