RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MYL3P08590 195 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 SPATA31C1P0DKV0 1188 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 NMT1P30419 496 aaKnown RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 KCNMA1Q12791 1236 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 MAP2K5Q13163 448 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 LLGL1Q15334 1064 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 RFX8Q6ZV50 586 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PPP1R16BQ96T49 567 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PTPN18Q99952 460 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 DUSP9Q99956 384 aaKnown RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 PDGFCQ9NRA1 345 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PDP2Q9P2J9 529 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PAIP2BQ9ULR5 123 aaKnown RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 ZNF711Q9Y462 761 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 SMCHD1A6NHR9 2005 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 UTRNP46939 3433 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 RPTORQ8N122 1335 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 ABLIM1O14639 778 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PJA2O43164 708 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 THAP12O43422 761 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 DCTN3O75935 186 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 NR2F2P24468 414 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 FKBP3Q00688 224 aaKnown RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 LBRQ14739 615 aaKnown RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 PRAMEF19Q5SWL8 479 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 PIGWQ7Z7B1 504 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 TRIM50Q86XT4 487 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 AFG1LQ8WV93 481 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 ZNF668Q96K58 619 aaPredicted RBP11.54□□□□□ -0.56
LSM3-201ENST00000306024 HSD17B14Q9BPX1 270 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 SMARCAD1Q9H4L7 1026 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 VTA1Q9NP79 307 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 AKT3Q9Y243 479 aa11.54□□□□□ -0.56
LSM3-201ENST00000306024 O00370 1275 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SLC16A4O15374 487 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 C6orf222P0C671 652 aaPredicted RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 SRGAP2CP0DJJ0 459 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 KRT15P19012 456 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SERPINB3P29508 390 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 VPS41P49754 854 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 FSTL1Q12841 308 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 ARHGAP24Q8N264 748 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 GUF1Q8N442 669 aaKnown RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 CEP70Q8NHQ1 597 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SENP7Q9BQF6 1050 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 DCLRE1BQ9H816 532 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SIPA1L1O43166 1804 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 HNRNPDLO14979 420 aaKnown RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 CA12O43570 354 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 DGAT1O75907 488 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 CCNE2O96020 404 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 CETN1Q12798 172 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 BNIP1Q12981 228 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 ACVR2BQ13705 512 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SNX30Q5VWJ9 437 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 DNAAF5Q86Y56 855 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 CCDC60Q8IWA6 550 aaPredicted RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 ZBTB8OSQ8IWT0 167 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 C4orf19Q8IY42 314 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 KCTD17Q8N5Z5 321 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 EIF1ADQ8N9N8 165 aaKnown RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 FBXO25Q8TCJ0 367 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 ZFAND2BQ8WV99 257 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 TRAPPC9Q96Q05 1148 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 DMAP1Q9NPF5 467 aaPredicted RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 ANKEF1Q9NU02 776 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 CAPN9O14815 690 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 ENTPD5O75356 428 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 EPHB2P29323 1055 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 SOCS4Q8WXH5 440 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 TMEM143Q96AN5 459 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 NLRP4Q96MN2 994 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 ZNF317Q96PQ6 595 aaPredicted RBP11.53□□□□□ -0.56
LSM3-201ENST00000306024 MTRQ99707 1265 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 GPRC5CQ9NQ84 441 aa11.53□□□□□ -0.56
LSM3-201ENST00000306024 E7ENQ6 273 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 INO80B-WBP1J3KQ70 363 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 GYG2O15488 501 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 CNMDO75829 334 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 OATP04181 439 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 ACADSP16219 412 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 MUTP22033 750 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 RARRES1P49788 294 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 LIG4P49917 911 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 SP3Q02447 781 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 PPP1R21Q6ZMI0 780 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 MAP7D3Q8IWC1 876 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 PGM2Q96G03 612 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 ERP44Q9BS26 406 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 INO80BQ9C086 356 aaPredicted RBP11.52□□□□□ -0.56
LSM3-201ENST00000306024 TTYH3Q9C0H2 523 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 FAM49AQ9H0Q0 323 aaPredicted RBP11.52□□□□□ -0.56
LSM3-201ENST00000306024 SEMA4AQ9H3S1 761 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 DNAAF2Q9NVR5 837 aaKnown RBP11.52□□□□□ -0.56
LSM3-201ENST00000306024 SEL1LQ9UBV2 794 aa11.52□□□□□ -0.56
LSM3-201ENST00000306024 NKX1-2Q9UD57 310 aaPredicted RBP11.52□□□□□ -0.56
LSM3-201ENST00000306024 ZMYND8Q9ULU4 1186 aaPredicted RBP11.52□□□□□ -0.56
LSM3-201ENST00000306024 TROVE2P10155 538 aaKnown RBP eCLIP11.52□□□□□ -0.57
LSM3-201ENST00000306024 KCNA2P16389 499 aa11.52□□□□□ -0.57
LSM3-201ENST00000306024 MMP13P45452 471 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms