RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CLUL1Q15846 466 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 SEPT7Q16181 437 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 SFT2D3Q587I9 215 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 DUS1LQ6P1R4 473 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 PPM1KQ8N3J5 372 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 RBM15BQ8NDT2 890 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 EPS8L1Q8TE68 723 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 NCSTNQ92542 709 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 DTNBP1Q96EV8 351 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 CENPKQ9BS16 269 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 MARCOQ9UEW3 520 aaPredicted RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 PCDHGB4Q9UN71 923 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 NEU2Q9Y3R4 380 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 PCDHGB5Q9Y5G0 923 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 ATP8B3O60423 1300 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 FCHO1O14526 889 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 ASLP04424 464 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 KITP10721 976 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 MYL2P10916 166 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 KRT10P13645 584 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 SSTR1P30872 391 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 CLK2P49760 499 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 DLG1Q12959 904 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 PDIA2Q13087 525 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 ATP13A4Q4VNC1 1196 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 PRPF4O43172 522 aaKnown RBP eCLIP14.23□□□□□ -0.13
SKA3-201ENST00000298260 SORBS3O60504 671 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 FAM13AO94988 1023 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 RARBP10826 455 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 GALK1P51570 392 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 TMED1Q13445 227 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 ZRSR2Q15696 482 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 RNF111Q6ZNA4 994 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 RBM12BQ8IXT5 1001 aaKnown RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 ZNF276Q8N554 614 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 GSTCDQ8NEC7 633 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 TTC17Q96AE7 1141 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 FRMD4BQ9Y2L6 1034 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 HEMK1Q9Y5R4 338 aaPredicted RBP14.23□□□□□ -0.13
SKA3-201ENST00000298260 ACTL7BQ9Y614 415 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 FAM86B1E9PN63 330 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 FAM86B2P0C5J1 330 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 BGNP21810 368 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 FMO1Q01740 532 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 BTKQ06187 659 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 PICALMQ13492 652 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SYCP2LQ5T4T6 812 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 RASSF3Q86WH2 238 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 TPH2Q8IWU9 490 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SH2D3AQ9BRG2 576 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 MANSC1Q9H8J5 431 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 AGPAT3Q9NRZ7 376 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 NDE1Q9NXR1 346 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SLC7A8Q9UHI5 535 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 USTQ9Y2C2 406 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 ZNF510Q9Y2H8 683 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 TDRKHQ9Y2W6 561 aaKnown RBP14.22□□□□□ -0.13
SKA3-201ENST00000298260 ROBO3Q96MS0 1386 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 MAST2Q6P0Q8 1798 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 DCAF8L1A6NGE4 600 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 ZWINTO95229 277 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 AKR1B1P15121 316 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 HADHBP55084 474 aaKnown RBP14.22□□□□□ -0.13
SKA3-201ENST00000298260 AQP4P55087 323 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 NCOA4Q13772 614 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 C1orf146Q5VVC0 180 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 RINT1Q6NUQ1 792 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 CCDC62Q6P9F0 684 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 FAM196AQ6ZSG2 479 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SESTD1Q86VW0 696 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 ACSF2Q96CM8 615 aaPredicted RBP14.22□□□□□ -0.13
SKA3-201ENST00000298260 NR1H4Q96RI1 486 aaPredicted RBP14.22□□□□□ -0.13
SKA3-201ENST00000298260 TSSK1BQ9BXA7 367 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 TRIM55Q9BYV6 548 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SHCBP1LQ9BZQ2 653 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 TMEM117Q9H0C3 514 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 SMYD3Q9H7B4 428 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 DDX43Q9NXZ2 648 aaKnown RBP14.22□□□□□ -0.13
SKA3-201ENST00000298260 COMMD3-BMI1R4GMX3 469 aa14.22□□□□□ -0.13
SKA3-201ENST00000298260 ARFGEF1Q9Y6D6 1849 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 FDX1P10109 184 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 MAPK4P31152 587 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 TFDP1Q14186 410 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 RASA2Q15283 850 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 DBN1Q16643 649 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 SHROOM1Q2M3G4 852 aaPredicted RBP14.21□□□□□ -0.13
SKA3-201ENST00000298260 DPP8Q6V1X1 898 aaPredicted RBP14.21□□□□□ -0.13
SKA3-201ENST00000298260 KRT27Q7Z3Y8 459 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 SKA1Q96BD8 255 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 ANO3Q9BYT9 981 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 NOCTQ9UK39 431 aaKnown RBP14.21□□□□□ -0.13
SKA3-201ENST00000298260 RABGAP1Q9Y3P9 1069 aa14.21□□□□□ -0.13
SKA3-201ENST00000298260 PNMA6FA0A0J9YX94 578 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 GOLGA8IPA6NC78 632 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 GOLGA8JA6NMD2 632 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 BTDP43251 543 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 BFSP1Q12934 665 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 ALCAMQ13740 583 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 ZFYVE27Q5T4F4 411 aa14.21□□□□□ -0.14
SKA3-201ENST00000298260 RGS9BPQ6ZS82 235 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms