RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 MROH7Q68CQ1 1323 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PSME3P61289 254 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KSR2Q6VAB6 950 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 COPS6Q7L5N1 327 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 LONP2Q86WA8 852 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DPP10Q8N608 796 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KBTBD3Q8NAB2 608 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 OSCP1Q8WVF1 389 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PGBD1Q96JS3 809 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 THTPAQ9BU02 230 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ZWILCHQ9H900 591 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 F8W810 466 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CDC40O60508 579 aaKnown RBP eCLIP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GTF2H1P32780 548 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PTGES3Q15185 160 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PHKG1Q16816 387 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CYP4F22Q6NT55 531 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 BARGINQ6ZT62 677 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF804AQ7Z570 1209 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 NT5C1BQ96P26 610 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DNAJC11Q9NVH1 559 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 H2AFY2Q9P0M6 372 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GRID1Q9ULK0 1009 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RUVBL2Q9Y230 463 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PTPN22Q9Y2R2 807 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM66O15016 1216 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 IGHDP01880 384 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CDK17Q00537 523 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CDH18Q13634 790 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 AARS2Q5JTZ9 985 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RHPN2Q8IUC4 686 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 LRRC17Q8N6Y2 441 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 STARD8Q92502 1023 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PHB2Q99623 299 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SH3D21A4FU49 640 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TSC22D2O75157 780 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 VPS4BO75351 444 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GUCA1CO95843 209 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ITIH1P19827 911 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ITGAXP20702 1163 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KPNA1P52294 538 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 NEK5Q6P3R8 708 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 EXOC3L1Q86VI1 746 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PABPC3Q9H361 631 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RAD18Q9NS91 495 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ATP8A2Q9NTI2 1148 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CD109Q6YHK3 1445 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KLHL33A6NCF5 533 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GOLGA8SH3BPF8 625 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ZPR1O75312 459 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CASP2P42575 452 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CACNA2D1P54289 1103 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 BTN3A2P78410 334 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGAP17Q68EM7 881 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SULT1C3Q6IMI6 304 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ASB2Q96Q27 587 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 EFCAB10A6NFE3 127 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 UBAP1LF5GYI3 381 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 IGF2BP3O00425 579 aaKnown RBP eCLIP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 COX10Q12887 443 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TBRG1Q3YBR2 411 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MZT2AQ6P582 158 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 LDHAL6AQ6ZMR3 332 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SMIM5Q71RC9 77 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KCTD6Q8NC69 237 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PRAG1Q86YV5 1406 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DHFRP00374 187 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 APOC1P02654 83 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 S100GP29377 79 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MTFR1Q15390 333 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KNOP1Q1ED39 458 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 P2RX5Q93086 422 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CIDECQ96AQ7 238 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MSANTD3Q96H12 275 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ERMAPQ96PL5 475 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 APOL2Q9BQE5 337 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PLEKHA5Q9HAU0 1116 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RIC8BQ9NVN3 520 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TAB2Q9NYJ8 693 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC154A6NI56 674 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SLC27A2O14975 620 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 S100A2P29034 98 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NFYCQ13952 458 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PUM3Q15397 648 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SAMD4BQ5PRF9 694 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 C20orf194Q5TEA3 1177 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ANKRD26P1Q6NSI1 321 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TBC1D19Q8N5T2 526 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SPATA17Q96L03 361 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PNPLA3Q9NST1 481 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STK36Q9NRP7 1315 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 H0YJX3 145 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PDPK1O15530 556 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 BUB1O43683 1085 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 EXTL3O43909 919 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MYCP01106 439 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 IFNGR2P38484 337 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STARP49675 285 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 HSF2Q03933 536 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms