RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 OR6B2Q6IFH4 312 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 C16orf87Q6PH81 154 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 KCNK18Q7Z418 384 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 C4orf32Q8N8J7 132 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 FAM213AQ9BRX8 229 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 BLOC1S4Q9NUP1 217 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 INPP5FQ9Y2H2 1132 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 RSPH10B2B2RC85 870 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 MEIS2O14770 477 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 PRPSAP2O60256 369 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 RSPH10BP0C881 870 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 EEF1DP29692 281 aaKnown RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 Q4G0T1 1027 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 CPA5Q8WXQ8 436 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 TRPV6Q9H1D0 765 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 UNC45AQ9H3U1 944 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 RXFP1Q9HBX9 757 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 MAGEA13PA6NCF6 341 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 DDNO94850 711 aaPredicted RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 GABPB2Q8TAK5 448 aaPredicted RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 POLR3CQ9BUI4 534 aaPredicted RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 RUSC1Q9BVN2 902 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 SHCBP1LQ9BZQ2 653 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 F5H423 210 aaPredicted RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 EPHB6O15197 1021 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 PSMC6P62333 389 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 IQCKQ8N0W5 287 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 PIK3R5Q8WYR1 880 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 MOV10L1Q9BXT6 1211 aaKnown RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 OSBPL8Q9BZF1 889 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 PSMC3IPQ9P2W1 217 aaPredicted RBP16.16■□□□□ 0.18
SHH-201ENST00000297261 LZTS1Q9Y250 596 aa16.16■□□□□ 0.18
SHH-201ENST00000297261 SLC26A4O43511 780 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 CASP4P49662 377 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 IL1RL1Q01638 556 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 ZCWPW2Q504Y3 356 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 THEMIS2Q5TEJ8 643 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 LMBRD2Q68DH5 695 aaPredicted RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 TMEM35BQ8NCS4 154 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 KIAA1683Q9H0B3 1180 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 KRT4P19013 534 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 HAS1Q92839 578 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 JPH1Q9HDC5 661 aaPredicted RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 SNED1Q8TER0 1413 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 IGKV6D-41A0A0C4DH26 115 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 FSCBQ5H9T9 825 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 C3orf62Q6ZUJ4 267 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 MTDHQ86UE4 582 aaKnown RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 MCPH1Q8NEM0 835 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 ZNF507Q8TCN5 953 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 UPF3AQ9H1J1 476 aaKnown RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 ADA2Q9NZK5 511 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 UVRAGQ9P2Y5 699 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 SLC9A2Q9UBY0 812 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 DENND3A2RUS2 1198 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 MCF2P10911 925 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 CASP2P42575 452 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 STX1BP61266 288 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 MRPS9P82933 396 aaKnown RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 BTNL9Q6UXG8 535 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 ZBTB33Q86T24 672 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 SDCCAG3Q96C92 435 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 PDP2Q9P2J9 529 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 WARS2Q9UGM6 360 aaKnown RBP16.15■□□□□ 0.18
SHH-201ENST00000297261 ANKRD36CQ5JPF3 1778 aa16.15■□□□□ 0.18
SHH-201ENST00000297261 INO80B-WBP1J3KQ70 363 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 FOXN3O00409 490 aaPredicted RBP16.14■□□□□ 0.17
SHH-201ENST00000297261 SLC35G1Q2M3R5 365 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 PLA2G4FQ68DD2 849 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 HAUS6Q7Z4H7 955 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 SESTD1Q86VW0 696 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 ARID3BQ8IVW6 561 aaPredicted RBP16.14■□□□□ 0.17
SHH-201ENST00000297261 TTC13Q8NBP0 860 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 SH3GL2Q99962 352 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 ZSWIM1Q9BR11 485 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 APOL6Q9BWW8 343 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 INO80BQ9C086 356 aaPredicted RBP16.14■□□□□ 0.17
SHH-201ENST00000297261 KLC2Q9H0B6 622 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 RNF103-CHMP3A0A140T963 221 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 O00370 1275 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 ADCY3O60266 1144 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 QPCTQ16769 361 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 TKFCQ3LXA3 575 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 RARS2Q5T160 578 aaKnown RBP16.14■□□□□ 0.17
SHH-201ENST00000297261 FBXL13Q8NEE6 735 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 SHISA4Q96DD7 197 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 HSD3B7Q9H2F3 369 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 K7ERI5 159 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 RFX1P22670 979 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 MMP14P50281 582 aa16.14■□□□□ 0.17
SHH-201ENST00000297261 TAF1BQ53T94 588 aaPredicted RBP16.14■□□□□ 0.17
SHH-201ENST00000297261 AGPSO00116 658 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 ATP9AO75110 1047 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 CACNA2D1P54289 1103 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 ACCSLQ4AC99 568 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 SNX30Q5VWJ9 437 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 CYFIP1Q7L576 1253 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 ZNF302Q9NR11 478 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 PNMA3Q9UL41 463 aa16.13■□□□□ 0.17
SHH-201ENST00000297261 SRGAP2CP0DJJ0 459 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms