RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TTMPQ5BVD1 217 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 ZNF484Q5JVG2 852 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 DNAJC24Q6P3W2 148 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 ERICH1Q86X53 443 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 TAB3Q8N5C8 712 aaPredicted RBP12.2□□□□□ -0.46
CUX1-202ENST00000292538 UBA3Q8TBC4 463 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 FBXO25Q8TCJ0 367 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 KIF12Q96FN5 646 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 FAM81BQ96LP2 452 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 ERP44Q9BS26 406 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 RAB17Q9H0T7 212 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 NMRK2Q9NPI5 230 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 CHST7Q9NS84 486 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 ASIC3Q9UHC3 531 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.2□□□□□ -0.46
CUX1-202ENST00000292538 CEP83Q9Y592 693 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 LCTP09848 1927 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 CYP1A1P04798 512 aaPredicted RBP12.2□□□□□ -0.46
CUX1-202ENST00000292538 ECHS1P30084 290 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 GCLCP48506 637 aaPredicted RBP12.2□□□□□ -0.46
CUX1-202ENST00000292538 AARSP49588 968 aaKnown RBP eCLIP12.2□□□□□ -0.462e-6■■■■■ 51.2
CUX1-202ENST00000292538 CENPCQ03188 943 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 SMTNL2Q2TAL5 461 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 DENND1BQ6P3S1 775 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 LEKR1Q6ZMV7 388 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 CATSPER4Q7RTX7 472 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 TRIM6Q9C030 488 aaPredicted RBP12.2□□□□□ -0.46
CUX1-202ENST00000292538 PDZD7Q9H5P4 517 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 KLK14Q9P0G3 267 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 RASAL2Q9UJF2 1139 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 PAPPA2Q9BXP8 1791 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 LOXHD1Q8IVV2 1947 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 PHF2O75151 1096 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 NPTXRO95502 500 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 MMP3P08254 477 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 MYL3P08590 195 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 AKAP5P24588 427 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 DYNLT1P63172 113 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 TAF1CQ15572 869 aaPredicted RBP12.19□□□□□ -0.46
CUX1-202ENST00000292538 GSTA5Q7RTV2 222 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ZNF677Q86XU0 584 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 EMC1Q8N766 993 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.19□□□□□ -0.46
CUX1-202ENST00000292538 CD101Q93033 1021 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 EXOC4Q96A65 974 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ADPGKQ9BRR6 497 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 HERPUD2Q9BSE4 406 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 PLVAPQ9BX97 442 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ZWILCHQ9H900 591 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 PTPRHQ9HD43 1115 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 TNFSF13BQ9Y275 285 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ASAP2O43150 1006 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 GRAP2O75791 330 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ASPAP45381 313 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 PLCB3Q01970 1234 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 SLC10A6Q3KNW5 377 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 KCNT1Q5JUK3 1230 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ALS2CLQ60I27 953 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 TMEM35BQ8NCS4 154 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ACAP3Q96P50 834 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 TWNKQ96RR1 684 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 FAM107BQ9H098 131 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 ABHD16BQ9H3Z7 469 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 MRPL47Q9HD33 250 aaKnown RBP12.19□□□□□ -0.46
CUX1-202ENST00000292538 PARVAQ9NVD7 372 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 SNTG2Q9NY99 539 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 SIX4Q9UIU6 781 aa12.19□□□□□ -0.46
CUX1-202ENST00000292538 R3HDM2Q9Y2K5 976 aaKnown RBP12.19□□□□□ -0.46
CUX1-202ENST00000292538 MAGEB2O15479 319 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 COILP38432 576 aaPredicted RBP12.18□□□□□ -0.46
CUX1-202ENST00000292538 RPL21P46778 160 aaKnown RBP12.18□□□□□ -0.46
CUX1-202ENST00000292538 CST9Q5W186 159 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 DNAJB3Q8WWF6 145 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 PIK3R5Q8WYR1 880 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 TRIM11Q96F44 468 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 HPDLQ96IR7 371 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 XYLT2Q9H1B5 865 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 PCSK1NQ9UHG2 260 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 OTOFQ9HC10 1997 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 PTPRFP10586 1907 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 EVPLQ92817 2033 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 TNFRSF8P28908 595 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 SLCO1A2P46721 670 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 HADHBP55084 474 aaKnown RBP12.18□□□□□ -0.46
CUX1-202ENST00000292538 TMEM132DQ14C87 1099 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 DUSP28Q4G0W2 176 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 TXNRD3NBQ6F5E7 133 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 ANKRD23Q86SG2 305 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 C12orf29Q8N999 325 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 FEZF2Q8TBJ5 459 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 LRRC45Q96CN5 670 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 SDCBP2Q9H190 292 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 LRRC4CQ9HCJ2 640 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 FAM114A2Q9NRY5 505 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 FLRT1Q9NZU1 646 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 WDR90Q96KV7 1748 aa12.18□□□□□ -0.46
CUX1-202ENST00000292538 PROSCO94903 275 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 MYBL1P10243 752 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 CHRNA3P32297 505 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 AP3M2P53677 418 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms