RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SERINC5Q86VE9 423 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 ALG6Q9Y672 507 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 SMIM28A0A1B0GU29 152 aa17.58■□□□□ 0.41
USP4-201ENST00000265560 BTNL10A8MVZ5 291 aa17.58■□□□□ 0.41
USP4-201ENST00000265560 UBR7Q8N806 425 aa17.58■□□□□ 0.41
USP4-201ENST00000265560 ZNF564Q8TBZ8 553 aaPredicted RBP17.58■□□□□ 0.41
USP4-201ENST00000265560 NCANO14594 1321 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 KPNA6O60684 536 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 SEC31AO94979 1220 aaKnown RBP17.58■□□□□ 0.4
USP4-201ENST00000265560 MAP2K2P36507 400 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 BPIFB4P59827 614 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 CYP4A22Q5TCH4 519 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 MCOLN2Q8IZK6 566 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 KRT35Q92764 455 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 AP1M1Q9BXS5 423 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 ELOVL4Q9GZR5 314 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 ANKZF1Q9H8Y5 726 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 TCP1P17987 556 aaKnown RBP17.58■□□□□ 0.4
USP4-201ENST00000265560 NOMO3P69849 1222 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 SLC7A5Q01650 507 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 ZNF618Q5T7W0 954 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 RNF180Q86T96 592 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 PDCL2Q8N4E4 241 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 WHAMMQ8TF30 809 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 HDAC7Q8WUI4 952 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 TAF4BQ92750 862 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 RBM12Q9NTZ6 932 aaKnown RBP17.58■□□□□ 0.4
USP4-201ENST00000265560 ADAM22Q9P0K1 906 aa17.58■□□□□ 0.4
USP4-201ENST00000265560 A0A0A6YYK5 440 aaPredicted RBP17.57■□□□□ 0.4
USP4-201ENST00000265560 ZNF132P52740 706 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 RAD23BP54727 409 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 IFI16Q16666 785 aaKnown RBP17.57■□□□□ 0.4
USP4-201ENST00000265560 MAP3K21Q5TCX8 1036 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 AMFRQ9UKV5 643 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 C2CD2Q9Y426 696 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 TRPV2Q9Y5S1 764 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 CASP8AP2Q9UKL3 1982 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 FKTNO75072 461 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 COMTP21964 271 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 RBP5P82980 135 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 NME8Q8N427 588 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 SPATA4Q8NEY3 305 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 UBA3Q8TBC4 463 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 HEXIM2Q96MH2 286 aaKnown RBP17.57■□□□□ 0.4
USP4-201ENST00000265560 ANAPC7Q9UJX3 599 aa17.57■□□□□ 0.4
USP4-201ENST00000265560 GRK4P32298 578 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 NDST1P52848 882 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 TNNC1P63316 161 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 DENND1BQ6P3S1 775 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 WDTC1Q8N5D0 677 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 ALG3Q92685 438 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 FAM81BQ96LP2 452 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 GAD1Q99259 594 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 MRPL45Q9BRJ2 306 aaKnown RBP17.56■□□□□ 0.4
USP4-201ENST00000265560 PADI3Q9ULW8 664 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 CNTN6Q9UQ52 1028 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 CYP1A1P04798 512 aaPredicted RBP17.56■□□□□ 0.4
USP4-201ENST00000265560 MLH1P40692 756 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 LHX8Q68G74 356 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 RSPH3Q86UC2 560 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 SENP6Q9GZR1 1112 aaPredicted RBP17.56■□□□□ 0.4
USP4-201ENST00000265560 SPTLC1O15269 473 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 MGEA5O60502 916 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 PDGFRBP09619 1106 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 CCDC142Q17RM4 750 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 DCAF12L1Q5VU92 463 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 SLFN11Q7Z7L1 901 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 SLC4A11Q8NBS3 891 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 HMX1Q9NP08 348 aaPredicted RBP17.56■□□□□ 0.4
USP4-201ENST00000265560 FAM49BQ9NUQ9 324 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 CYTH4Q9UIA0 394 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 STXBP5LQ9Y2K9 1186 aa17.56■□□□□ 0.4
USP4-201ENST00000265560 TUBB2AQ13885 445 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 ALKAL1Q6UXT8 129 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 RHOT2Q8IXI1 618 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 PCSK9Q8NBP7 692 aaKnown RBP17.55■□□□□ 0.4
USP4-201ENST00000265560 GLT1D1Q96MS3 346 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 TUBB2BQ9BVA1 445 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 BCO2Q9BYV7 579 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 GTF3C4Q9UKN8 822 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 ITGA11Q9UKX5 1188 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 NME7Q9Y5B8 376 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 O00370 1275 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 CLCN6P51797 869 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 RPL7AP62424 266 aaKnown RBP17.55■□□□□ 0.4
USP4-201ENST00000265560 MTFR1Q15390 333 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 ACOT1Q86TX2 421 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 GDAP1L1Q96MZ0 367 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 LRRC1Q9BTT6 524 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 MIOSQ9NXC5 875 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 USTQ9Y2C2 406 aa17.55■□□□□ 0.4
USP4-201ENST00000265560 CYP1A2P05177 515 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 GJC1P36383 396 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 PAFAH1B1P43034 410 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 CENPCQ03188 943 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 ZBTB6Q15916 424 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 C9orf57Q5W0N0 161 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 MON1BQ7L1V2 547 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 KLHL7Q8IXQ5 586 aa17.54■□□□□ 0.4
USP4-201ENST00000265560 NR2E1Q9Y466 385 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms