RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 PICALMQ13492 652 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 ZCWPW2Q504Y3 356 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 TRIM61Q5EBN2 209 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 RTP2Q5QGT7 225 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 CDC42EP5Q6NZY7 148 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 LRRC55Q6ZSA7 311 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 JAMLQ86YT9 394 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 NIM1KQ8IY84 436 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 MYOCDQ8IZQ8 938 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 CERS5Q8N5B7 392 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 AGBL5Q8NDL9 886 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 FLCNQ8NFG4 579 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 TRIM58Q8NG06 486 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 NPLOC4Q8TAT6 608 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 SYN2Q92777 582 aaPredicted RBP8.6□□□□□ -1.03
CXCR4-201ENST00000241393 HAS1Q92839 578 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 MAGEB10Q96LZ2 347 aaPredicted RBP8.6□□□□□ -1.03
CXCR4-201ENST00000241393 CCDC42Q96M95 316 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 TMX4Q9H1E5 349 aaPredicted RBP8.6□□□□□ -1.03
CXCR4-201ENST00000241393 EPC1Q9H2F5 836 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 PSTPIP2Q9H939 334 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 CARS2Q9HA77 564 aaKnown RBP8.6□□□□□ -1.03
CXCR4-201ENST00000241393 SLC39A2Q9NP94 309 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 PSD3Q9NYI0 1048 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 NDOR1Q9UHB4 597 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 SYNPO2Q9UMS6 1093 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 L1RE1Q9UN81 338 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 AFF2P51816 1311 aa8.6□□□□□ -1.03
CXCR4-201ENST00000241393 TBX3O15119 743 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PPP1R11O60927 126 aaPredicted RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 GTF2A2P52657 109 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ZP2Q05996 745 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PABPC4Q13310 644 aaKnown RBP eCLIP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 CCDC96Q2M329 555 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 MAP9Q49MG5 647 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 FAM26FQ5R3K3 315 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 STYK1Q6J9G0 422 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 APOBEC3HQ6NTF7 200 aaKnown RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ZNF572Q7Z3I7 529 aaPredicted RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 DTX1Q86Y01 620 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 SPPL2CQ8IUH8 684 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 CCDC65Q8IXS2 484 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ZC3H3Q8IXZ2 948 aaKnown RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 DNAJC19Q96DA6 116 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PNKPQ96T60 521 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 IDI2Q9BXS1 227 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 VIPAS39Q9H9C1 493 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 GPR27Q9NS67 375 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PCDHA12Q9UN75 941 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 JRKLQ9Y4A0 524 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ANKRD31Q8N7Z5 1873 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 FRMD3A2A2Y4 597 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PJA2O43164 708 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 TACC1O75410 805 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 FOSP01100 380 aaPredicted RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PLS3P13797 630 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 IDEP14735 1019 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 OAS2P29728 719 aaKnown RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 HSPA1LP34931 641 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PDE6BP35913 854 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 USP14P54578 494 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 CHRNEQ04844 493 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 COASYQ13057 564 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 HAUS3Q68CZ6 603 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 OXR1Q8N573 874 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 FRS2Q8WU20 508 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 SECISBP2LQ93073 1101 aaKnown RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ALPK1Q96QP1 1244 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 KCNMB3Q9NPA1 279 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.59□□□□□ -1.03
CXCR4-201ENST00000241393 CLEC1BQ9P126 229 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 PI4KBQ9UBF8 816 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 TRIM10Q9UDY6 481 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 FAM184BQ9ULE4 1060 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 COL4A3BPQ9Y5P4 624 aa8.59□□□□□ -1.03
CXCR4-201ENST00000241393 COL2A1P02458 1487 aaPredicted RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 WASH4PA8MWX3 477 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 RBAK-RBAKDNI3L0D1 243 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 MARCH6O60337 910 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 NPHS1O60500 1241 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 ATP1A1P05023 1023 aaKnown RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 KIR2DL1P43626 348 aaPredicted RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 KIR2DL2P43627 348 aaPredicted RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 KLK7P49862 253 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 MMP14P50281 582 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 GPR85P60893 370 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 VSNL1P62760 191 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 TRAF1Q13077 416 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 SF1Q15637 639 aaKnown RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 UBE2SQ16763 222 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 EDRF1Q3B7T1 1238 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 TKFCQ3LXA3 575 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 PDXDC1Q6P996 788 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 KCNK18Q7Z418 384 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 RNF10Q8N5U6 811 aaKnown RBP8.58□□□□□ -1.04
CXCR4-201ENST00000241393 ANKS4BQ8N8V4 417 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 GMCL1P1Q8NEA9 526 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 FLAD1Q8NFF5 587 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 NEK11Q8NG66 645 aa8.58□□□□□ -1.04
CXCR4-201ENST00000241393 ERMNQ8TAM6 284 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms