RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TJP3O95049 919 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 KRT1P04264 644 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 KRT10P13645 584 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 NQO1P15559 274 aaKnown RBP19.82■□□□□ 0.76
CPSF3-201ENST00000238112 NF2P35240 595 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 COPS2P61201 443 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 IL9RQ01113 521 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 HAPLN2Q9GZV7 340 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 RXFP1Q9HBX9 757 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 KLHL14Q9P2G3 628 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF541Q9H0D2 1346 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 FAM47DPA6NHR8 397 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 SUPT20HL2P0C7V6 817 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 PDE4CQ08493 712 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 BNIP1Q12981 228 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 RIPK1Q13546 671 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 SUPT20HL1Q3ZLR7 823 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 TBC1D31Q96DN5 1066 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 TTC25Q96NG3 672 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 IMPG2Q9BZV3 1241 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 DNPEPQ9ULA0 475 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 CNTN6Q9UQ52 1028 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 NUB1Q9Y5A7 615 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 DNALI1O14645 258 aaPredicted RBP19.81■□□□□ 0.76
CPSF3-201ENST00000238112 NAMPTP43490 491 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 KCNJ2P63252 427 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 NR1H3Q13133 447 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 ATP13A4Q4VNC1 1196 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 EAPPQ56P03 285 aaPredicted RBP19.81■□□□□ 0.76
CPSF3-201ENST00000238112 ZBTB41Q5SVQ8 909 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 ASAP3Q8TDY4 903 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 GRAMD1AQ96CP6 724 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 SLITRK1Q96PX8 696 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 PAIP2Q9BPZ3 127 aaKnown RBP19.81■□□□□ 0.76
CPSF3-201ENST00000238112 TARS2Q9BW92 718 aaKnown RBP19.81■□□□□ 0.76
CPSF3-201ENST00000238112 EURLQ9NYK6 297 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 PRKAG3Q9UGI9 489 aa19.81■□□□□ 0.76
CPSF3-201ENST00000238112 PIGRP01833 764 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 RPL7AP62424 266 aaKnown RBP19.8■□□□□ 0.76
CPSF3-201ENST00000238112 NCOA4Q13772 614 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 MTFR1Q15390 333 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 CIAPIN1Q6FI81 312 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 KLHL29Q96CT2 875 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 FHDC1Q9C0D6 1143 aaPredicted RBP19.8■□□□□ 0.76
CPSF3-201ENST00000238112 PORCNQ9H237 461 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 MMP8P22894 467 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 GLRA2P23416 452 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 ARSEP51690 589 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 BACE1P56817 501 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF268Q14587 947 aaPredicted RBP19.8■□□□□ 0.76
CPSF3-201ENST00000238112 TMEM63BQ5T3F8 832 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 OR5B17Q8NGF7 314 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF606Q8WXB4 792 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 PITPNM3Q9BZ71 974 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 FBXO40Q9UH90 709 aa19.8■□□□□ 0.76
CPSF3-201ENST00000238112 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.8■□□□□ 0.76
CPSF3-201ENST00000238112 SPATA31C2B4DYI2 1134 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 IGF2BP3O00425 579 aaKnown RBP eCLIP19.79■□□□□ 0.76
CPSF3-201ENST00000238112 STAM2O75886 525 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 CALB1P05937 261 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 HARSP12081 509 aaKnown RBP19.79■□□□□ 0.76
CPSF3-201ENST00000238112 OAZ1P54368 228 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 MCL1Q07820 350 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 GPS1Q13098 491 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 DRICH1Q6PGQ1 229 aaPredicted RBP19.79■□□□□ 0.76
CPSF3-201ENST00000238112 MFSD7Q6UXD7 560 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 FITM2Q8N6M3 262 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 SLC7A3Q8WY07 619 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 MAML1Q92585 1016 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF302Q9NR11 478 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 A0A0B4J269 797 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 TMEM191CA6NGB0 347 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 OATP04181 439 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 TMEM191BP0C7N4 346 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 ZSCAN5DPP0CG00 497 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 TCF4P15884 667 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 TAC1P20366 129 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 RNF43Q68DV7 783 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 DNAJC24Q6P3W2 148 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 DCUN1D2Q6PH85 259 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 ALLCQ8N6M5 410 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 GLIS1Q8NBF1 620 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 REPS2Q8NFH8 660 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 RMDN2Q96LZ7 410 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 MCEEQ96PE7 176 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 UBN1Q9NPG3 1134 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 STK32BQ9NY57 414 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 IVNS1ABPQ9Y6Y0 642 aa19.79■□□□□ 0.76
CPSF3-201ENST00000238112 WDR81Q562E7 1941 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 PECAM1P16284 738 aaPredicted RBP19.78■□□□□ 0.76
CPSF3-201ENST00000238112 LRRC38Q5VT99 294 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 CGB2Q6NT52 195 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 TRABD2AQ86V40 505 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 CYP39A1Q9NYL5 469 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 PNMA3Q9UL41 463 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 FER1L6Q2WGJ9 1857 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 CNTNAP2Q9UHC6 1331 aa19.78■□□□□ 0.76
CPSF3-201ENST00000238112 POC1B-GALNT4F8VUJ3 575 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 FOXN2P32314 431 aa19.77■□□□□ 0.76
CPSF3-201ENST00000238112 ALDH5A1P51649 535 aaPredicted RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms