RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 AMPD3Q01432 767 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 DNM1Q05193 864 aaKnown RBP12.63□□□□□ -0.39
CLN3-257ENST00000637110 PPM1LQ5SGD2 360 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 CMASQ8NFW8 434 aaPredicted RBP12.63□□□□□ -0.39
CLN3-257ENST00000637110 FEZF2Q8TBJ5 459 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 HDAC7Q8WUI4 952 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 ATRIPQ8WXE1 791 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 HVCN1Q96D96 273 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 DNAJC19Q96DA6 116 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 FIZ1Q96SL8 496 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 CLSTN3Q9BQT9 956 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 ARHGEF3Q9NR81 526 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 DLGAP2Q9P1A6 1054 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 AGO2Q9UKV8 859 aaKnown RBP12.63□□□□□ -0.39
CLN3-257ENST00000637110 UBQLN1Q9UMX0 589 aaKnown RBP12.63□□□□□ -0.39
CLN3-257ENST00000637110 POLIQ9UNA4 740 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 PCDHB13Q9Y5F0 798 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 PCDHGA2Q9Y5H1 932 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 CDY1Q9Y6F8 540 aa12.63□□□□□ -0.39
CLN3-257ENST00000637110 TTC26A0AVF1 554 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 DCDC2BA2VCK2 349 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 TISP43B9A030 160 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 H7C4K7 107 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 MEFVO15553 781 aaPredicted RBP12.62□□□□□ -0.39
CLN3-257ENST00000637110 ZMYND10O75800 440 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 ELF1P32519 619 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 ASIC1P78348 528 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 DMWDQ09019 674 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 POSTNQ15063 836 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 ENOX2Q16206 610 aaKnown RBP12.62□□□□□ -0.39
CLN3-257ENST00000637110 ATL3Q6DD88 541 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 SLC39A4Q6P5W5 647 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 SHC4Q6S5L8 630 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 CD300LGQ6UXG3 332 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 DSTYKQ6XUX3 929 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 STXBP4Q6ZWJ1 553 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 CD302Q8IX05 232 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 SLC44A3Q8N4M1 653 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 BEST2Q8NFU1 509 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 PJA1Q8NG27 643 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 KCNN1Q92952 543 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 SHDQ96IW2 340 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 TNMDQ9H2S6 317 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 CUEDC2Q9H467 287 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 ST6GALNAC4Q9H4F1 302 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 ZDHHC7Q9NXF8 308 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 MTRRQ9UBK8 725 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 FBXW11Q9UKB1 542 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 FBXO4Q9UKT5 387 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 USP18Q9UMW8 372 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 PCDHA7Q9UN72 937 aa12.62□□□□□ -0.39
CLN3-257ENST00000637110 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.62□□□□□ -0.39
CLN3-257ENST00000637110 SYN3O14994 580 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 POLR2DO15514 142 aaKnown RBP12.61□□□□□ -0.39
CLN3-257ENST00000637110 ADAM12O43184 909 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 LAMTOR5O43504 91 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 PRPF6O94906 941 aaKnown RBP12.61□□□□□ -0.39
CLN3-257ENST00000637110 C1RP00736 705 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 C8AP07357 584 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 GUCY2FP51841 1108 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 ALCAMQ13740 583 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 RAB33AQ14088 237 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 BECN1Q14457 450 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 TMEM132DQ14C87 1099 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 CTXN3Q4LDR2 81 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 AXDND1Q5T1B0 1012 aaPredicted RBP12.61□□□□□ -0.39
CLN3-257ENST00000637110 L1TD1Q5T7N2 865 aaKnown RBP12.61□□□□□ -0.39
CLN3-257ENST00000637110 JADE1Q6IE81 842 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 LILRA6Q6PI73 481 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 CYP26C1Q6V0L0 522 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 APPL2Q8NEU8 664 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 GPR152Q8TDT2 470 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 FAM213AQ9BRX8 229 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 BCO2Q9BYV7 579 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 PRKD2Q9BZL6 878 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 IKZF4Q9H2S9 585 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 TMEM206Q9H813 350 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 EPS15L1Q9UBC2 864 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 CPSF3Q9UKF6 684 aaKnown RBP12.61□□□□□ -0.39
CLN3-257ENST00000637110 BACE2Q9Y5Z0 518 aa12.61□□□□□ -0.39
CLN3-257ENST00000637110 PRRG1O14668 218 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 CCL16O15467 120 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 XYLBO75191 536 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 NFICP08651 508 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 CYP3A5P20815 502 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 CASP5P51878 434 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 KCNA1Q09470 495 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 COL9A2Q14055 689 aaPredicted RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 ZNF280DQ6N043 979 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 RSPO2Q6UXX9 243 aaPredicted RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 GET4Q7L5D6 327 aaPredicted RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 USP37Q86T82 979 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 CEP57L1Q8IYX8 460 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 TMEM130Q8N3G9 435 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SLC7A14Q8TBB6 771 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 RSAD2Q8WXG1 361 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SAAL1Q96ER3 474 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SUSD3Q96L08 255 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SPATA32Q96LK8 384 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 TSPAN18Q96SJ8 248 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms