RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 C11orf88Q6PI97 169 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 LBX2Q6XYB7 198 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 RFX8Q6ZV50 586 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TMEM110Q86TL2 294 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 PTRH1Q86Y79 214 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 RBM12BQ8IXT5 1001 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 SLC7A5P1Q8MH63 180 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 OR8H3Q8N146 312 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 LRRC47Q8N1G4 583 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 LINC00469Q8N7U9 141 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 GOLM1Q8NBJ4 401 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 SPC24Q8NBT2 197 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 MOSPD2Q8NHP6 518 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CCHCR1Q8TD31 782 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 RNF141Q8WVD5 230 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 BTN2A2Q8WVV5 523 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 FATE1Q969F0 183 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 GIMAP5Q96F15 307 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 NRBF2Q96F24 287 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 VPS39Q96JC1 886 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 C16orf45Q96MC5 204 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 PPP1R9BQ96SB3 815 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 EYA3Q99504 573 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ZPBPQ9BS86 351 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 NOL10Q9BSC4 688 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 DDX23Q9BUQ8 820 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 APOL5Q9BWW9 433 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 TMEM120AQ9BXJ8 343 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 MRPL4Q9BYD3 311 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 PRDM14Q9GZV8 571 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 BRMS1Q9HCU9 246 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 INCENPQ9NQS7 918 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 USP40Q9NVE5 1235 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 DDX18Q9NVP1 670 aaKnown RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 SPATA7Q9P0W8 599 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ORC3Q9UBD5 711 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 CHORDC1Q9UHD1 332 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 RASAL2Q9UJF2 1139 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 GRID1Q9ULK0 1009 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 POLHQ9Y253 713 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ATP11BQ9Y2G3 1177 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 CAB39Q9Y376 341 aaPredicted RBP3.29□□□□□ -1.88
VIM-210ENST00000637053 PCDHB5Q9Y5E4 795 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 SNX8Q9Y5X2 465 aa3.29□□□□□ -1.88
VIM-210ENST00000637053 ZNF804BA4D1E1 1349 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SPAG9O60271 1321 aaKnown RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 A0A0B4J269 797 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 M0R2C6 588 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 TLR3O15455 904 aaKnown RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 RIPK2O43353 540 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 NOBOXO60393 691 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 CSPG5O95196 566 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SGPL1O95470 568 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 OPN1MWP04001 364 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 CSTBP04080 98 aaKnown RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 MPOP05164 745 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SRGAP2BP0DMP2 458 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 OPN1MW2P0DN77 364 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 OPN1MW3P0DN78 364 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 CYP2A6P11509 494 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 CKMT1AP12532 417 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 VEGFAP15692 232 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 GAP43P17677 238 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 IL11P20809 199 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 FGFR4P22455 802 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 MC4RP32245 332 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 GDF5P43026 501 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 IFNAR2P48551 515 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 PRIM2P49643 509 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 PEX5P50542 639 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 ETV1P50549 477 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 ARL4CP56559 192 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 ERVK-21P61565 698 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 TGFB2P61812 414 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 HTRA3P83110 453 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 DLX2Q07687 328 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 TRAF1Q13077 416 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 NMIQ13287 307 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 SEMA5AQ13591 1074 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 CUL4AQ13619 759 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 ZNF267Q14586 743 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 COG2Q14746 738 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 NAA25Q14CX7 972 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 LLGL1Q15334 1064 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 TAF5Q15542 800 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SMAD1Q15797 465 aaKnown RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 CLPPQ16740 277 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 GNPTABQ3T906 1256 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 BOLA3Q53S33 107 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 DCAF17Q5H9S7 520 aaPredicted RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 FAM209AQ5JX71 171 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 OLFML2BQ68BL8 750 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 TPGS2Q68CL5 300 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 IQSEC1Q6DN90 963 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 OTUD7BQ6GQQ9 843 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SHQ1Q6PI26 577 aaKnown RBP3.28□□□□□ -1.88
VIM-210ENST00000637053 LMBR1LQ6UX01 489 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 ARMC9Q7Z3E5 817 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 SPRED1Q7Z699 444 aa3.28□□□□□ -1.88
VIM-210ENST00000637053 PPFIBP1Q86W92 1011 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms