RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 A0A0U1RQF3 1178 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 TBXAS1P24557 533 aaPredicted RBP21.55■■□□□ 1.04
CLN3-250ENST00000636839 ZNF667Q5HYK9 610 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 CCDC122Q5T0U0 273 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 USP38Q8NB14 1042 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 DDX1Q92499 740 aaKnown RBP21.55■■□□□ 1.04
CLN3-250ENST00000636839 ZNF592Q92610 1267 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 RABGGTAQ92696 567 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 JAKMIP2Q96AA8 810 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 PAWRQ96IZ0 340 aaKnown RBP21.55■■□□□ 1.04
CLN3-250ENST00000636839 PPP1R12CQ9BZL4 782 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 NENFQ9UMX5 172 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 PAXBP1Q9Y5B6 917 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 SQORQ9Y6N5 450 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 ARL5CA6NH57 179 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 CFHP08603 1231 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 TNFAIP3P21580 790 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 VAV2P52735 878 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 CCL23P55773 120 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 ORC1Q13415 861 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 PKN2Q16513 984 aaKnown RBP21.54■■□□□ 1.04
CLN3-250ENST00000636839 ARHGAP29Q52LW3 1261 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 C9orf57Q5W0N0 161 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 ALKBH5Q6P6C2 394 aaKnown RBP21.54■■□□□ 1.04
CLN3-250ENST00000636839 SYT10Q6XYQ8 523 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 ANKRD33Q7Z3H0 272 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 MRPL10Q7Z7H8 261 aaKnown RBP21.54■■□□□ 1.04
CLN3-250ENST00000636839 BEST2Q8NFU1 509 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 WDR24Q96S15 920 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 SALL4Q9UJQ4 1053 aa21.54■■□□□ 1.04
CLN3-250ENST00000636839 SCN1AP35498 2009 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 CCDC172P0C7W6 258 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 BFSP2Q13515 415 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 RBBP8NLQ8NC74 664 aaPredicted RBP21.53■■□□□ 1.04
CLN3-250ENST00000636839 PPP1R10Q96QC0 940 aaKnown RBP21.53■■□□□ 1.04
CLN3-250ENST00000636839 UBQLN1Q9UMX0 589 aaKnown RBP21.53■■□□□ 1.04
CLN3-250ENST00000636839 RALGAPA2Q2PPJ7 1873 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 ZNF623O75123 536 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 CYP2C18P33260 490 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 SCNN1GP51170 649 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 FMO1Q01740 532 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 BMS1Q14692 1282 aaKnown RBP21.53■■□□□ 1.04
CLN3-250ENST00000636839 TAF4BQ92750 862 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 SEZ6LQ9BYH1 1024 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 HMGXB4Q9UGU5 601 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 CNTN6Q9UQ52 1028 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 ATP11BQ9Y2G3 1177 aa21.53■■□□□ 1.04
CLN3-250ENST00000636839 SPTLC1O15269 473 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 ECHDC2Q86YB7 292 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 DBF4BQ8NFT6 615 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 FAM81BQ96LP2 452 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 TRAIPQ9BWF2 469 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 BCO2Q9BYV7 579 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 WNT8AQ9H1J5 351 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 HIPK3Q9H422 1215 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 RGS18Q9NS28 235 aa21.52■■□□□ 1.04
CLN3-250ENST00000636839 R3HCC1Q9Y3T6 440 aaKnown RBP21.52■■□□□ 1.04
CLN3-250ENST00000636839 ANO9A1A5B4 782 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 MACROD2A1Z1Q3 448 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 ATICP31939 592 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 GNG11P61952 73 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 NAB2Q15742 525 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 TWNKQ96RR1 684 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 MMS19Q96T76 1030 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 ZSWIM1Q9BR11 485 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 VRTNQ9H8Y1 702 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 TET1Q8NFU7 2136 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 C9IYK1 514 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 PIRO00625 290 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 POMCP01189 267 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 PDE6CP51160 858 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 ZNF132P52740 706 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 LRRC26Q2I0M4 334 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 ZNF598Q86UK7 904 aaKnown RBP21.51■■□□□ 1.03
CLN3-250ENST00000636839 VPS36Q86VN1 386 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 DNAI1Q9UI46 699 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 INPP5FQ9Y2H2 1132 aa21.51■■□□□ 1.03
CLN3-250ENST00000636839 GOLGA6L9A6NEM1 432 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 DCDC2CA8MYV0 355 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 PITPNM1O00562 1244 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 TLR3O15455 904 aaKnown RBP21.5■■□□□ 1.03
CLN3-250ENST00000636839 ETF1P62495 437 aaKnown RBP21.5■■□□□ 1.03
CLN3-250ENST00000636839 CDR2Q01850 454 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 FMNL3Q8IVF7 1028 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 WHAMMQ8TF30 809 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 PAAF1Q9BRP4 392 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 PUF60Q9UHX1 559 aaKnown RBP21.5■■□□□ 1.03
CLN3-250ENST00000636839 GIT1Q9Y2X7 761 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 SNX9Q9Y5X1 595 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 PDCD11Q14690 1871 aaKnown RBP21.5■■□□□ 1.03
CLN3-250ENST00000636839 KIF5AQ12840 1032 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 RSAD1Q9HA92 442 aa21.5■■□□□ 1.03
CLN3-250ENST00000636839 RAB27AP51159 221 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 MYO1EQ12965 1108 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 PLEKHG4Q58EX7 1191 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 ZNF569Q5MCW4 686 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 HACE1Q8IYU2 909 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 TFAP2BQ92481 460 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 RPS6KC1Q96S38 1066 aa21.49■■□□□ 1.03
CLN3-250ENST00000636839 SCN5AQ14524 2016 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms