RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FAM186BQ8IYM0 893 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 SYAP1Q96A49 352 aaPredicted RBP19.53■□□□□ 0.72
CLN3-239ENST00000628023 B3GALT6Q96L58 329 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 MFSD14AQ96MC6 490 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 INTS13Q9NVM9 706 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 SSX2IPQ9Y2D8 614 aa19.53■□□□□ 0.72
CLN3-239ENST00000628023 LOC730098B7Z3J9 87 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 I3L4J1 428 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 AKAP3O75969 853 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 ITGB3P05106 788 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 KRT19P08727 400 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 PSMC2P35998 433 aaKnown RBP19.52■□□□□ 0.72
CLN3-239ENST00000628023 BRCC3P46736 316 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 FKBP3Q00688 224 aaKnown RBP19.52■□□□□ 0.72
CLN3-239ENST00000628023 PTPN14Q15678 1187 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 DUOXA2Q1HG44 320 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 TMEM184AQ6ZMB5 413 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 RNF168Q8IYW5 571 aaPredicted RBP19.52■□□□□ 0.72
CLN3-239ENST00000628023 MLKLQ8NB16 471 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 EDAQ92838 391 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 EEF2KMTQ96G04 330 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 FAM84AQ96KN4 292 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 ZNF560Q96MR9 790 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 TTPALQ9BTX7 342 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 KCNH6Q9H252 994 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 DACH1Q9UI36 760 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 ITGA11Q9UKX5 1188 aa19.52■□□□□ 0.72
CLN3-239ENST00000628023 C5orf42Q9H799 3197 aa19.52■□□□□ 0.71
CLN3-239ENST00000628023 PTPRJQ12913 1337 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 MUC6Q6W4X9 2439 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 HIDE1A8MVS5 230 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 PPEF2O14830 753 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 MAPK13O15264 365 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 CLSTN1O94985 981 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 HOXB8P17481 243 aaPredicted RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 IGFBP6P24592 240 aaPredicted RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 POLR2BP30876 1174 aaKnown RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 STX17P56962 302 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 DSTYKQ6XUX3 929 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 INTS8Q75QN2 995 aaKnown RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 CSGALNACT2Q8N6G5 542 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 MRPL43Q8N983 215 aaKnown RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 OR5B17Q8NGF7 314 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 RIN2Q8WYP3 895 aaPredicted RBP19.51■□□□□ 0.71
CLN3-239ENST00000628023 RPGRIP1Q96KN7 1286 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 EMILIN2Q9BXX0 1053 aa19.51■□□□□ 0.71
CLN3-239ENST00000628023 C2orf71A6NGG8 1288 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 HOXD11P31277 338 aaPredicted RBP19.5■□□□□ 0.71
CLN3-239ENST00000628023 NLRP12P59046 1061 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 DSG1Q02413 1049 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 ANKRD54Q6NXT1 300 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 CAVIN1Q6NZI2 390 aaKnown RBP19.5■□□□□ 0.71
CLN3-239ENST00000628023 LLGL2Q6P1M3 1020 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 C1orf127Q8N9H9 656 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 VN1R2Q8NFZ6 395 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 MKNK1Q9BUB5 465 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 AGAP1Q9UPQ3 857 aa19.5■□□□□ 0.71
CLN3-239ENST00000628023 ANO9A1A5B4 782 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 LRRIQ3A6PVS8 624 aaPredicted RBP19.49■□□□□ 0.71
CLN3-239ENST00000628023 PIRO00625 290 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 SLC16A3O15427 465 aaKnown RBP19.49■□□□□ 0.71
CLN3-239ENST00000628023 PHACTR2O75167 634 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 EFEMP2O95967 443 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 TKTP29401 623 aaKnown RBP19.49■□□□□ 0.71
CLN3-239ENST00000628023 PNPLA4P41247 253 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 TAF6P49848 677 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 VAMP7P51809 220 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 RBP5P82980 135 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 RBM10P98175 930 aaKnown RBP19.49■□□□□ 0.71
CLN3-239ENST00000628023 CREMQ03060 361 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 BFSP1Q12934 665 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 BIRC3Q13489 604 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 CBX2Q14781 532 aaPredicted RBP19.49■□□□□ 0.71
CLN3-239ENST00000628023 DPCR1Q3MIW9 517 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 SV2CQ496J9 727 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 RTP2Q5QGT7 225 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 TTI2Q6NXR4 508 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 PDXDC1Q6P996 788 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 SASS6Q6UVJ0 657 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 CD300LGQ6UXG3 332 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 HFE2Q6ZVN8 426 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 PARD3BQ8TEW8 1205 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 SUSD6Q92537 303 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 CASP10Q92851 521 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 SUSD3Q96L08 255 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-239ENST00000628023 CHST7Q9NS84 486 aa19.49■□□□□ 0.71
CLN3-239ENST00000628023 ARHGEF37A1IGU5 675 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 SYN3O14994 580 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 ODC1P11926 461 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 PAX3P23760 479 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 AP3M2P53677 418 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 LILRA4P59901 499 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 MYO1EQ12965 1108 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 TRPC3Q13507 836 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 KCNC3Q14003 757 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 PSMD5Q16401 504 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 CCDC40Q4G0X9 1142 aa19.48■□□□□ 0.71
CLN3-239ENST00000628023 KIAA0319Q5VV43 1072 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms