RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 RNF19AQ9NV58 838 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 DNAJC17Q9NVM6 304 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 NFS1Q9Y697 457 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 A0A087WZ62 844 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 PI4K2BG5E9Z4 385 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 OGTO15294 1046 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TMEM191BP0C7N4 346 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ADORA2AP29274 412 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 COILP38432 576 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 BPIFB4P59827 614 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 DUOXA2Q1HG44 320 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ZDHHC24Q6UX98 284 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 DPH6Q7L8W6 267 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ARMC9Q7Z3E5 817 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 AFG1LQ8WV93 481 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TFAP2BQ92481 460 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 SEC14L1Q92503 715 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 MPHOSPH6Q99547 160 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 FDXACB1Q9BRP7 624 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 ZDHHC18Q9NUE0 388 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TJP2Q9UDY2 1190 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 CPSF3Q9UKF6 684 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 R3HDM2Q9Y2K5 976 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 GPR25O00155 361 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 LGR5O75473 907 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 HOXC6P09630 235 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 FGFR4P22455 802 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 CHRNA3P32297 505 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ABCD1P33897 745 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TMEM62Q0P6H9 643 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 SGO2Q562F6 1265 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 CDCA2Q69YH5 1023 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 PLPPR4Q7Z2D5 763 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ATP6V1G3Q96LB4 118 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 SMARCAD1Q9H4L7 1026 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 GRHL1Q9NZI5 618 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 AKT3Q9Y243 479 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 IGKV6-21A0A0C4DH24 114 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 TLDC2A0PJX2 215 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 PDHXO00330 501 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 NFICP08651 508 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 MYZAPP0CAP1 466 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 RALAP11233 206 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 ADCY2Q08462 1091 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 SNAPC2Q13487 334 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 PPP1R7Q15435 360 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 WDR72Q3MJ13 1102 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 KAZNQ674X7 775 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 WDR49Q8IV35 697 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 TCP11Q8WWU5 503 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 LCMT1Q9UIC8 334 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 MTUS1Q9ULD2 1270 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 A0A0G2JMZ2 1700 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 MGAMO43451 1857 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 LOC285556D6RIA3 1793 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 GOLGA6L10A6NI86 522 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 ACKR2O00590 384 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 KRT10P13645 584 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 CD19P15391 556 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 NR1D1P20393 614 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 PSMC4P43686 418 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 MCL1Q07820 350 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 IFFO1Q0D2I5 559 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 ZNF699Q32M78 642 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 ODF2Q5BJF6 829 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 USP50Q70EL3 339 aaPredicted RBP11.3□□□□□ -0.6
CUX1-221ENST00000622516 PWWP2AQ96N64 755 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 SEMA4AQ9H3S1 761 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 MROH8Q9H579 483 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 IFT122Q9HBG6 1241 aa11.3□□□□□ -0.6
CUX1-221ENST00000622516 LAMA3Q16787 3333 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 F8VP50 259 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 LGALS2P05162 132 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 TBXAS1P24557 533 aaPredicted RBP11.29□□□□□ -0.6
CUX1-221ENST00000622516 MBTD1Q05BQ5 628 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 ARHGAP1Q07960 439 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 DHX34Q14147 1143 aaKnown RBP11.29□□□□□ -0.6
CUX1-221ENST00000622516 KRT71Q3SY84 523 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 MPZL3Q6UWV2 235 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 ZNF677Q86XU0 584 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 GPRC5AQ8NFJ5 357 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 DDX27Q96GQ7 796 aaKnown RBP11.29□□□□□ -0.6
CUX1-221ENST00000622516 CCDC114Q96M63 670 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 MCEEQ96PE7 176 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 CDT1Q9H211 546 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 TMBIM4Q9HC24 238 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 ERAP1Q9NZ08 941 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 CALCOCO1Q9P1Z2 691 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 NOVA2Q9UNW9 492 aaKnown RBP11.29□□□□□ -0.6
CUX1-221ENST00000622516 MEFVO15553 781 aaPredicted RBP11.29□□□□□ -0.6
CUX1-221ENST00000622516 HBP1O60381 514 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 C22orf31O95567 290 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 PTP4A2Q12974 167 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 SLC29A2Q14542 456 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 FAM182AQ5T1J6 154 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 LIN9Q5TKA1 542 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 TXNRD3NBQ6F5E7 133 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 TAPT1Q6NXT6 567 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms