RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 HOXD10P28358 340 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 STAT1P42224 750 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 RASSF2P50749 326 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 PRPF4BQ13523 1007 aaKnown RBP23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 EPHA7Q15375 998 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 TRIM68Q6AZZ1 485 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 INTS8Q75QN2 995 aaKnown RBP23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 KCNK18Q7Z418 384 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 RMDN2Q96LZ7 410 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 UBIAD1Q9Y5Z9 338 aa23.3■■□□□ 1.32
POLR2J3-220ENST00000613744 DYNC1I2Q13409 638 aaKnown RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 CYP1B1Q16678 543 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 OTOP1Q7RTM1 612 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 TRIB2Q92519 343 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 PDGFCQ9NRA1 345 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 POTEMA6NI47 508 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 PDLIM1O00151 329 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 MSH4O15457 936 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 SLCO1A2P46721 670 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 YARSP54577 528 aaKnown RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 STRN3Q13033 797 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 TCEAL1Q15170 157 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 PPP1R21Q6ZMI0 780 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 ZNF467Q7Z7K2 595 aaPredicted RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 SESTD1Q86VW0 696 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 RBBP8NLQ8NC74 664 aaPredicted RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 ETNPPLQ8TBG4 499 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 DNAJC9Q8WXX5 260 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 TGS1Q96RS0 853 aaKnown RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 MPHOSPH6Q99547 160 aaKnown RBP23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 SIX2Q9NPC8 291 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 PCDHA12Q9UN75 941 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 TRIM33Q9UPN9 1127 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 ACTL7BQ9Y614 415 aa23.29■■□□□ 1.32
POLR2J3-220ENST00000613744 MEIS1O00470 390 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 XRCC5P13010 732 aaKnown RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 KRT13P13646 458 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 FGFR4P22455 802 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 NR2F2P24468 414 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 TRIM32Q13049 653 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 MTMR1Q13613 665 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 TMEM63BQ5T3F8 832 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 MAMDC4Q6UXC1 1216 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 SDCCAG8Q86SQ7 713 aaPredicted RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 ECHDC2Q86YB7 292 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 RAET1EQ8TD07 263 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 KCNH7Q9NS40 1196 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 C2CD2Q9Y426 696 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 TRAFD1O14545 582 aaPredicted RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 HNRNPCL1O60812 293 aaKnown RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 SP100P23497 879 aaPredicted RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 POLGP54098 1239 aaPredicted RBP23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 MGAT5Q09328 741 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 LRRC14Q15048 493 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 C11orf63Q6NUN7 778 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 NELFCDQ8IXH7 590 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 UBL4BQ8N7F7 174 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 SYT15Q9BQS2 421 aa23.28■■□□□ 1.32
POLR2J3-220ENST00000613744 BRCA2P51587 3418 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 SLC16A3O15427 465 aaKnown RBP23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 STX2P32856 288 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 CGB2Q6NT52 195 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 RHOT2Q8IXI1 618 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 SLFN12Q8IYM2 578 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 PRELID2Q8N945 189 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 ANKLE1Q8NAG6 615 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 LNX1Q8TBB1 728 aaPredicted RBP23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 MORC4Q8TE76 937 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 NUDCD1Q96RS6 583 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 TRIM4Q9C037 500 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 BCAS3Q9H6U6 928 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 STARD13Q9Y3M8 1113 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 LRRC37A2A6NM11 1700 aa23.27■■□□□ 1.32
POLR2J3-220ENST00000613744 ATP9AO75110 1047 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 DCTN3O75935 186 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 SNX1Q13596 522 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 XRRA1Q6P2D8 792 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 TMEM154Q6P9G4 183 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 FAM13CQ8NE31 585 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 MGARPQ8TDB4 240 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 IFT43Q96FT9 208 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 GORASP1Q9BQQ3 440 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 ZNF577Q9BSK1 485 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 DCLRE1BQ9H816 532 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 OSGEPQ9NPF4 335 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 LGALS13Q9UHV8 139 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 USP20Q9Y2K6 914 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 LRCH1Q9Y2L9 728 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 USH1CQ9Y6N9 552 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 ADGRA3Q8IWK6 1321 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 ADCY3O60266 1144 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 CUL3Q13618 768 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 LAMB3Q13751 1172 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 ARHGEF6Q15052 776 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 OLIG1Q8TAK6 271 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 FAM136AQ96C01 138 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 C18orf8Q96DM3 657 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 NKIRAS1Q9NYS0 192 aa23.26■■□□□ 1.31
POLR2J3-220ENST00000613744 STOML1Q9UBI4 398 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms