RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PTPN14Q15678 1187 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 NAB2Q15742 525 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 WDR72Q3MJ13 1102 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 TRIM60Q495X7 471 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 ZNF667Q5HYK9 610 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 C9orf57Q5W0N0 161 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 GLYCTKQ8IVS8 523 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 IRX2Q9BZI1 471 aaPredicted RBP15.29■□□□□ 0.04
USP39-220ENST00000613444 SDCBP2Q9H190 292 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 MIOSQ9NXC5 875 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 GIT1Q9Y2X7 761 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 PIRO00625 290 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 FANCGO15287 622 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 PJA2O43164 708 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 CALCAP01258 141 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 WEE2P0C1S8 567 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 CYP3A5P20815 502 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 MLH1P40692 756 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 MAGEA1P43355 309 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 TLE2Q04725 743 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 SMYD5Q6GMV2 418 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 TMEM270Q6UE05 265 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 GAD1Q99259 594 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 CISHQ9NSE2 258 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 NXF1Q9UBU9 619 aaKnown RBP15.28■□□□□ 0.04
USP39-220ENST00000613444 ARL5CA6NH57 179 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 C9IYK1 514 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 TLR3O15455 904 aaKnown RBP15.28■□□□□ 0.04
USP39-220ENST00000613444 OFD1O75665 1012 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 FMO1Q01740 532 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 PLEKHG4Q58EX7 1191 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 ALKBH5Q6P6C2 394 aaKnown RBP15.28■□□□□ 0.04
USP39-220ENST00000613444 SCARA5Q6ZMJ2 495 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 ECHDC2Q86YB7 292 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 HACE1Q8IYU2 909 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 LRRC52Q8N7C0 313 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 PCDHB18PQ96TA0 734 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 GOLGA2P5Q9HBQ8 144 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 PCDHB4Q9Y5E5 795 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 DUSP10Q9Y6W6 482 aa15.28■□□□□ 0.04
USP39-220ENST00000613444 TNNT1P13805 278 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 FAM189BP81408 668 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 KIAA1328Q86T90 577 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 VPS36Q86VN1 386 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 DNAAF5Q86Y56 855 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 RPUSD2Q8IZ73 545 aaKnown RBP15.27■□□□□ 0.04
USP39-220ENST00000613444 RBBP8NLQ8NC74 664 aaPredicted RBP15.27■□□□□ 0.04
USP39-220ENST00000613444 PACSIN1Q9BY11 444 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 WNT8AQ9H1J5 351 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 TSPYL2Q9H2G4 693 aaPredicted RBP15.27■□□□□ 0.04
USP39-220ENST00000613444 SMYD3Q9H7B4 428 aa15.27■□□□□ 0.04
USP39-220ENST00000613444 TTC3P53804 2025 aa15.27■□□□□ 0.03
USP39-220ENST00000613444 MMEP08473 750 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 SKIP12755 728 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 TNFAIP3P21580 790 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 LRPAP1P30533 357 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 RAP1GAPP47736 663 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 CDH8P55286 799 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 ETF1P62495 437 aaKnown RBP15.26■□□□□ 0.03
USP39-220ENST00000613444 CDR2Q01850 454 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 TCTN1Q2MV58 587 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 ARHGAP29Q52LW3 1261 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 C10orf76Q5T2E6 689 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 TAS2R14Q9NYV8 317 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 TBX21Q9UL17 535 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 DCDC2CA8MYV0 355 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 INPPL1O15357 1258 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 XPOTO43592 962 aaKnown RBP15.26■□□□□ 0.03
USP39-220ENST00000613444 CLSTN1O94985 981 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 CD58P19256 250 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 PDE6CP51160 858 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 CCDC122Q5T0U0 273 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 TAF3Q5VWG9 929 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 SLC24A5Q71RS6 500 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 DBF4BQ8NFT6 615 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 WHAMMQ8TF30 809 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 PAWRQ96IZ0 340 aaKnown RBP15.26■□□□□ 0.03
USP39-220ENST00000613444 FTHL17Q9BXU8 183 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 HIPK3Q9H422 1215 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 RSAD1Q9HA92 442 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 CYP3A43Q9HB55 503 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 SALL4Q9UJQ4 1053 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 ATP8B3O60423 1300 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 MICAL3Q7RTP6 2002 aa15.26■□□□□ 0.03
USP39-220ENST00000613444 SPTLC1O15269 473 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 BPIFB4P59827 614 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 MYO1EQ12965 1108 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 CXCL10P02778 98 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 THP07101 528 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 SCNN1GP51170 649 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 INCA1Q0VD86 236 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 KIF5AQ12840 1032 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 ZNF677Q86XU0 584 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 PGBD4Q96DM1 585 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 SCLYQ96I15 445 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 WDR24Q96S15 920 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 ZSWIM1Q9BR11 485 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 C11orf49Q9H6J7 331 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 GUCA1BQ9UMX6 200 aa15.25■□□□□ 0.03
USP39-220ENST00000613444 R3HCC1Q9Y3T6 440 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms