RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ADGRD2Q7Z7M1 963 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 LRRC52Q8N7C0 313 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 MRPL43Q8N983 215 aaKnown RBP11.4□□□□□ -0.58
LIG1-210ENST00000596332 CACTINQ8WUQ7 758 aaKnown RBP11.4□□□□□ -0.58
LIG1-210ENST00000596332 MRPL38Q96DV4 380 aaKnown RBP11.4□□□□□ -0.58
LIG1-210ENST00000596332 TMEM169Q96HH4 297 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 SENP8Q96LD8 212 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 FNBP1Q96RU3 617 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 LMAN2LQ9H0V9 348 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 SDCBP2Q9H190 292 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 RXFP1Q9HBX9 757 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 METTL14Q9HCE5 456 aaKnown RBP11.4□□□□□ -0.58
LIG1-210ENST00000596332 DACH1Q9UI36 760 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 VWA8A3KMH1 1905 aa11.4□□□□□ -0.58
LIG1-210ENST00000596332 KPNA7A9QM74 516 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 XPOTO43592 962 aaKnown RBP11.39□□□□□ -0.59
LIG1-210ENST00000596332 OAZ2O95190 189 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 VNN2O95498 520 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 ASS1P00966 412 aaKnown RBP11.39□□□□□ -0.59
LIG1-210ENST00000596332 HLA-DRAP01903 254 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 TMEM191BP0C7N4 346 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 CCDC192P0DO97 292 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 ATP1A3P13637 1013 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 GTF2F1P35269 517 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIG1-210ENST00000596332 FMO5P49326 533 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 ZNF165P49910 485 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 AP3M2P53677 418 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 KCNH2Q12809 1159 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 COL19A1Q14993 1142 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 SOWAHAQ2M3V2 549 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 FAM171A1Q5VUB5 890 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 SPOPLQ6IQ16 392 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 PRSS55Q6UWB4 352 aaPredicted RBP11.39□□□□□ -0.59
LIG1-210ENST00000596332 LRSAM1Q6UWE0 723 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 OSTM1Q86WC4 334 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 GAS2L3Q86XJ1 694 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 GPR65Q8IYL9 337 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 AOPEPQ8N6M6 819 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 VN1R2Q8NFZ6 395 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 FEZF2Q8TBJ5 459 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 KBTBD7Q8WVZ9 684 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 PIK3R5Q8WYR1 880 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 ANKRD36BP1Q96IX9 119 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 CLSTN3Q9BQT9 956 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 CBX8Q9HC52 389 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 TMEM8AQ9HCN3 771 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 TLR9Q9NR96 1032 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 LMCD1Q9NZU5 365 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 L1RE1Q9UN81 338 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 NUB1Q9Y5A7 615 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 TIMM13Q9Y5L4 95 aaPredicted RBP11.39□□□□□ -0.59
LIG1-210ENST00000596332 EYSQ5T1H1 3165 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 MYO7AQ13402 2215 aa11.39□□□□□ -0.59
LIG1-210ENST00000596332 CARNS1A5YM72 827 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 GABRDO14764 452 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 HCRTO43612 131 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 CXCL14O95715 111 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 GNA14O95837 355 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 TNNC2P02585 160 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 CNPP09543 421 aaKnown RBP11.38□□□□□ -0.59
LIG1-210ENST00000596332 KRT13P13646 458 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 TAF6P49848 677 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 RBM10P98175 930 aaKnown RBP11.38□□□□□ -0.59
LIG1-210ENST00000596332 MYL5Q02045 173 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 KRT17Q04695 432 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 KCNMA1Q12791 1236 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 NCOA4Q13772 614 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 TCP11X2Q5H9J9 407 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 KRT39Q6A163 491 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 LILRA6Q6PI73 481 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.38□□□□□ -0.59
LIG1-210ENST00000596332 TATDN2Q93075 761 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 HPDLQ96IR7 371 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 KLHL5Q96PQ7 755 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 TCF25Q9BQ70 676 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 PI4K2AQ9BTU6 479 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 LIMA1Q9UHB6 759 aaKnown RBP11.38□□□□□ -0.59
LIG1-210ENST00000596332 PCDHB8Q9UN66 801 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 POLIQ9UNA4 740 aa11.38□□□□□ -0.59
LIG1-210ENST00000596332 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.38□□□□□ -0.59
LIG1-210ENST00000596332 SF3B1O75533 1304 aaKnown RBP eCLIP11.37□□□□□ -0.598e-6■■■■■ 107
LIG1-210ENST00000596332 KCNJ18B7U540 433 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 CYB561D2O14569 222 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 SYN3O14994 580 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 RPL17P18621 184 aaKnown RBP11.37□□□□□ -0.59
LIG1-210ENST00000596332 TYMPP19971 482 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 PAX3P23760 479 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 ATICP31939 592 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 APBA1Q02410 837 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 HYAL1Q12794 435 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 KCNJ12Q14500 433 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 KRT31Q15323 416 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 USP41Q3LFD5 358 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 CCDC40Q4G0X9 1142 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 VARS2Q5ST30 1063 aaKnown RBP11.37□□□□□ -0.59
LIG1-210ENST00000596332 WSCD1Q658N2 575 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 LUZP1Q86V48 1076 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 LRRTM3Q86VH5 581 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 PDCL2Q8N4E4 241 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 UBR7Q8N806 425 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms