RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 DUSP10Q9Y6W6 482 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 CFAP69A5D8W1 941 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 DGAT1O75907 488 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 CENPPQ6IPU0 288 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 SPATA2LQ8IUW3 424 aaPredicted RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 DCLK2Q8N568 766 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 SEMA6BQ9H3T3 888 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 XPNPEP3Q9NQH7 507 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 KLHL8Q9P2G9 620 aaPredicted RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 CCT8L1PA6NM43 557 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 H3BQF6 201 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 NKRFO15226 690 aaKnown RBP eCLIP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 PFDN1O60925 122 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 NPEPPSP55786 919 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 AMPD2Q01433 879 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 CYP4A22Q5TCH4 519 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 ACAD11Q709F0 780 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 DEFB128Q7Z7B8 93 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 A0A087X0T9 212 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 FAM47DPA6NHR8 397 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 FAM228BP0C875 321 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 PAMP19021 973 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 CENPCQ03188 943 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 HEATR6Q6AI08 1181 aaKnown RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 RIBC1Q8N443 379 aaPredicted RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 ALKBH8Q96BT7 664 aaKnown RBP13.39□□□□□ -0.27
DNMT1-228ENST00000592705 VPS39Q96JC1 886 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 FAM161BQ96MY7 647 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 RIT2Q99578 217 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 LACRTQ9GZZ8 138 aa13.39□□□□□ -0.27
DNMT1-228ENST00000592705 KITP10721 976 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CYP11B2P19099 503 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CNPY4Q8N129 248 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TNIP3Q96KP6 325 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TRIM15Q9C019 465 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 DOLKQ9UPQ8 538 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 ZFXP17010 805 aaPredicted RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 ALDH1A3P47895 512 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 SFSWAPQ12872 951 aaKnown RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 MOXD1Q6UVY6 613 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 DCP1BQ8IZD4 617 aaKnown RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 UPF1Q92900 1129 aaKnown RBP eCLIP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CAPNS2Q96L46 248 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 WWP1Q9H0M0 922 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 MRPL40Q9NQ50 206 aaKnown RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 MEGF6O75095 1541 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 PON1P27169 355 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TMC7Q7Z402 723 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TEX2Q8IWB9 1127 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CPA5Q8WXQ8 436 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CAVIN3Q969G5 261 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 VPS11Q9H270 941 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TMEM8AQ9HCN3 771 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 NDE1Q9NXR1 346 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 PSMC3IPQ9P2W1 217 aaPredicted RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 NEU2Q9Y3R4 380 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 SHPRHQ149N8 1683 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 PXDNQ92626 1479 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 PRKCBP05771 671 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CCDC15Q0P6D6 951 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 SNX17Q15036 470 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 RWDD4Q6NW29 188 aaKnown RBP13.38□□□□□ -0.27
DNMT1-228ENST00000592705 ZNF677Q86XU0 584 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 PIP4K2CQ8TBX8 421 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 ACTRT1Q8TDG2 376 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 SLC7A5P2Q9GIP4 190 aa13.38□□□□□ -0.27
DNMT1-228ENST00000592705 CCDC195A0A1B0GUA6 201 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 URODP06132 367 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 PDHA1P08559 390 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 SSTR3P32745 418 aaPredicted RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 COILP38432 576 aaPredicted RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 FNTAP49354 379 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 EIF3EP60228 445 aaKnown RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 FAM102AQ5T9C2 384 aaPredicted RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 HIPK4Q8NE63 616 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 TMEM120BA0PK00 339 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 ZBTB22O15209 634 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 KIF1CO43896 1103 aaKnown RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 ZNF189O75820 626 aaPredicted RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 TMEM117Q9H0C3 514 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 WDR35Q9P2L0 1181 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 ANGPTL3Q9Y5C1 460 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 PCDHB2Q9Y5E7 798 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 FAM237AA0A1B0GTK4 181 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 A8MXQ7 604 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 PI4K2BG5E9Z4 385 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 WNT10BO00744 389 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 PPFIA2O75334 1257 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 CDH6P55285 790 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 SATB1Q01826 763 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 ATP6V1E2Q96A05 226 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 GOLPH3Q9H4A6 298 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 SMYD3Q9H7B4 428 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 SUDS3Q9H7L9 328 aaPredicted RBP13.37□□□□□ -0.27
DNMT1-228ENST00000592705 TMBIM4Q9HC24 238 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 STAP1Q9ULZ2 295 aa13.37□□□□□ -0.27
DNMT1-228ENST00000592705 PIGHQ14442 188 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms