RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 ZNF516Q92618 1163 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 CD101Q93033 1021 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 TATDN2Q93075 761 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 LRCH3Q96II8 777 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 SPATA33Q96N06 139 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 AP1M1Q9BXS5 423 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 NFKBIZQ9BYH8 718 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 HAPLN2Q9GZV7 340 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 VTA1Q9NP79 307 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 CNOT8Q9UFF9 292 aaKnown RBP10.63□□□□□ -0.71
VPS25-202ENST00000589219 LCMT1Q9UIC8 334 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 ADAM21Q9UKJ8 722 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 NFU1Q9UMS0 254 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 CNTN6Q9UQ52 1028 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 UTP11Q9Y3A2 253 aaKnown RBP10.63□□□□□ -0.71
VPS25-202ENST00000589219 COL1A2P08123 1366 aa10.63□□□□□ -0.71
VPS25-202ENST00000589219 PTPRJQ12913 1337 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 AGPSO00116 658 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 SOX1O00570 391 aaPredicted RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 PHACTR2O75167 634 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 VNN1O95497 513 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 CYP1A1P04798 512 aaPredicted RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 EDN1P05305 212 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 PGK2P07205 417 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 RARBP10826 455 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 ACO1P21399 889 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 COMTP21964 271 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 CHRNA3P32297 505 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 GGCXP38435 758 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 SLC1A1P43005 524 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 NSFP46459 744 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 ATN1P54259 1190 aaPredicted RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 RNASE9P60153 205 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 YWHAEP62258 255 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 POU5F1Q01860 360 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 LAMTOR4Q0VGL1 99 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 NCOA4Q13772 614 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 HLTFQ14527 1009 aaKnown RBP eCLIP10.62□□□□□ -0.71
VPS25-202ENST00000589219 PTPROQ16827 1216 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 ZNF484Q5JVG2 852 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 SPDYCQ5MJ68 293 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 CFAP58Q5T655 872 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 LIN9Q5TKA1 542 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 MPZL3Q6UWV2 235 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 LRIG3Q6UXM1 1119 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 ZNF467Q7Z7K2 595 aaPredicted RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 CD302Q8IX05 232 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 C1orf131Q8NDD1 294 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 FAM76AQ8TAV0 307 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 MAIP1Q8WWC4 291 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 PRPF31Q8WWY3 499 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 IFT81Q8WYA0 676 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 VCPIP1Q96JH7 1222 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 ZBTB45Q96K62 511 aaPredicted RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 ACO2Q99798 780 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 TINF2Q9BSI4 451 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 PI4K2AQ9BTU6 479 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 FAM129AQ9BZQ8 928 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 DDX47Q9H0S4 455 aaKnown RBP10.62□□□□□ -0.71
VPS25-202ENST00000589219 FAM204AQ9H8W3 233 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 MTUS1Q9ULD2 1270 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 SCINQ9Y6U3 715 aa10.62□□□□□ -0.71
VPS25-202ENST00000589219 ESYT3A0FGR9 886 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 GOLGA6CA6NDK9 693 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ZSCAN5CA6NGD5 496 aaPredicted RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 TMEM110-MUSTN1A8MSY1 372 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ZBTB42B2RXF5 422 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ATMINO43313 823 aaPredicted RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 FAM189A1O60320 539 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 IL18RAPO95256 599 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 LSM8O95777 96 aaKnown RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 ASS1P00966 412 aaKnown RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 GH1P01241 217 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 GOLGA6DP0CG33 693 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 TXNP10599 105 aaKnown RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 ITGA4P13612 1032 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 PROZP22891 400 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 MARK3P27448 753 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 GNA15P30679 374 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 MAN1A1P33908 653 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 PHKA2P46019 1235 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 FNTAP49354 379 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ZNF132P52740 706 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 WNT7BP56706 349 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 RWDD2BP57060 319 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 MRPS25P82663 173 aaKnown RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 DR1Q01658 176 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 POU5F1BQ06416 359 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 LAMC2Q13753 1193 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 MESDQ14696 234 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 CYP1B1Q16678 543 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ZNF792Q3KQV3 632 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 HSDL1Q3SXM5 330 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 PRAMEF19Q5SWL8 479 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 LMBRD2Q68DH5 695 aaPredicted RBP10.61□□□□□ -0.71
VPS25-202ENST00000589219 SLC39A5Q6ZMH5 540 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 TSHZ1Q6ZSZ6 1077 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 MON1BQ7L1V2 547 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 ARMCX2Q7L311 632 aa10.61□□□□□ -0.71
VPS25-202ENST00000589219 EEPD1Q7L9B9 569 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms