RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NUB1Q9Y5A7 615 aa11.53□□□□□ -0.56
SMARCA4-213ENST00000587988 VWA8A3KMH1 1905 aa11.52□□□□□ -0.56
SMARCA4-213ENST00000587988 COL4A4P53420 1690 aaPredicted RBP11.52□□□□□ -0.56
SMARCA4-213ENST00000587988 TMEM265A0A087WTH1 108 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 CARNS1A5YM72 827 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 STX10O60499 249 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 PIK3CAP42336 1068 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 ERVFC1P60507 584 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 MYL7Q01449 175 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 KRT17Q04695 432 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 VWA3BQ502W6 1294 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 ZNF697Q5TEC3 545 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 FAM171A1Q5VUB5 890 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 Q7L0L9 218 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 VPS52Q8N1B4 723 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 FBXL13Q8NEE6 735 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 SUSD3Q96L08 255 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 SENP8Q96LD8 212 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 ZNF560Q96MR9 790 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 NDST4Q9H3R1 872 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 PRDM12Q9H4Q4 367 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 APOBEC3GQ9HC16 384 aaKnown RBP11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 RAB20Q9NX57 234 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 COQ4Q9Y3A0 265 aa11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 TIMM13Q9Y5L4 95 aaPredicted RBP11.52□□□□□ -0.57
SMARCA4-213ENST00000587988 ATG2AQ2TAZ0 1938 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 LRRC10BA6NIK2 292 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 KPNA7A9QM74 516 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 M0QZQ0 153 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 PMM2O15305 246 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 N4BP1O75113 896 aaKnown RBP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 ASS1P00966 412 aaKnown RBP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 SOD2P04179 222 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 FGFR3P22607 806 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 TKTP29401 623 aaKnown RBP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 ATICP31939 592 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 IRS1P35568 1242 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 PNPLA4P41247 253 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 FXR1P51114 621 aaKnown RBP eCLIP11.51□□□□□ -0.573e-6■■■□□ 17.4
SMARCA4-213ENST00000587988 COPB1P53618 953 aaKnown RBP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 MYO1EQ12965 1108 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 SV2CQ496J9 727 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 RTP2Q5QGT7 225 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 DSTYKQ6XUX3 929 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 CEP57Q86XR8 500 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 LMO3Q8TAP4 145 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 AUTS2Q8WXX7 1259 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 TATDN2Q93075 761 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 HERC2P3Q9BVR0 1158 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 ZBP1Q9H171 429 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 RBSNQ9H1K0 784 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 CHST7Q9NS84 486 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 POLIQ9UNA4 740 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 LZTS1Q9Y250 596 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 R3HCC1Q9Y3T6 440 aaKnown RBP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 PCDHGC5Q9Y5F6 944 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 SNX9Q9Y5X1 595 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 SF3B1O75533 1304 aaKnown RBP eCLIP11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 MYO9BQ13459 2157 aa11.51□□□□□ -0.57
SMARCA4-213ENST00000587988 GOLGA6L19H0YKK7 550 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 PES1O00541 588 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 CYB561D2O14569 222 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 FSCN2O14926 492 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 P4HA2O15460 535 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 TRAPPC3O43617 180 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 STAU1O95793 577 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 CTSAP10619 480 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 NOP14P78316 857 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 UBE3AQ05086 875 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 KCNMA1Q12791 1236 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 ELAVL2Q12926 359 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 SGSM1Q2NKQ1 1148 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 ZNF699Q32M78 642 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 USP41Q3LFD5 358 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 WDR72Q3MJ13 1102 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 KIAA0319Q5VV43 1072 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 WSCD1Q658N2 575 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 PRSS55Q6UWB4 352 aaPredicted RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 EHBP1Q8NDI1 1231 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 NAP1L5Q96NT1 182 aaPredicted RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 CRACR2AQ9BSW2 395 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 TTPALQ9BTX7 342 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 VRTNQ9H8Y1 702 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 GDAP2Q9NXN4 497 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 NXF1Q9UBU9 619 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 PUF60Q9UHX1 559 aaKnown RBP11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 PCDHB8Q9UN66 801 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 L1RE1Q9UN81 338 aa11.5□□□□□ -0.57
SMARCA4-213ENST00000587988 TSC2P49815 1807 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 C2CD2LO14523 706 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 SYN3O14994 580 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 TEX33O43247 280 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 LILRB3O75022 631 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 CLSTN1O94985 981 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 CXCL14O95715 111 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 SLC9A1P19634 815 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 CDH8P55286 799 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 FANCCQ00597 558 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 APBA1Q02410 837 aa11.49□□□□□ -0.57
SMARCA4-213ENST00000587988 DSG1Q02413 1049 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms