RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ASPAP45381 313 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 MESDQ14696 234 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 NOTUMQ6P988 496 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 CCNI2Q6ZMN8 369 aaPredicted RBP15.13■□□□□ 0.01
LIG3-205ENST00000585941 MON1BQ7L1V2 547 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 C1orf127Q8N9H9 656 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 SMC1BQ8NDV3 1235 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 ZNF606Q8WXB4 792 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 CYFIP2Q96F07 1278 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 TSPAN18Q96SJ8 248 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 ZSWIM1Q9BR11 485 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 BCO2Q9BYV7 579 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 NOC2LQ9Y3T9 749 aaKnown RBP15.13■□□□□ 0.01
LIG3-205ENST00000585941 CEP83Q9Y592 693 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 SCINQ9Y6U3 715 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 C17orf102A2RUQ5 167 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 TMEM88BA6NKF7 163 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 MED7O43513 233 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 ECM2O94769 699 aaPredicted RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 PAEPP09466 180 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 EIF4BP23588 611 aaKnown RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 CTNNA2P26232 953 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 SLC1A1P43005 524 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 IFT20Q8IY31 132 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 CPA5Q8WXQ8 436 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 PLVAPQ9BX97 442 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 ACBD3Q9H3P7 528 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 ADAM22Q9P0K1 906 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 SIX4Q9UIU6 781 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 PCDHGC3Q9UN70 934 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 GOLGA6L10A0A0M3HER8 536 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 KRIT1O00522 736 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 MAP2K7O14733 419 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 ATMINO43313 823 aaPredicted RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 SPOPO43791 374 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 ITGB3P05106 788 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 COMTP21964 271 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 HOXC8P31273 242 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 YARSP54577 528 aaKnown RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 RBP5P82980 135 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 GPS2Q13227 327 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 REM2Q8IYK8 340 aaPredicted RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 C7orf31Q8N865 590 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 TMEM35BQ8NCS4 154 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 CD101Q93033 1021 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 RNPC3Q96LT9 517 aaKnown RBP15.12■□□□□ 0.01
LIG3-205ENST00000585941 SLITRK6Q9H5Y7 841 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 SPC25Q9HBM1 224 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 CASP8AP2Q9UKL3 1982 aa15.12■□□□□ 0.01
LIG3-205ENST00000585941 TRIP12Q14669 1992 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 TMEM110-MUSTN1A8MSY1 372 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 RPLP2P05387 115 aaKnown RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 CALB1P05937 261 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 CD58P19256 250 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 HOXA11P31270 313 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 CDH5P33151 784 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 CTNNA1P35221 906 aaKnown RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 PSMC4P43686 418 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 CRYBB1P53674 252 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 GJA9P57773 515 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 LACTBP83111 547 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 PURAQ00577 322 aaKnown RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 PTPROQ16827 1216 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 WDR72Q3MJ13 1102 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 TAF2Q6P1X5 1199 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 EIF1ADQ8N9N8 165 aaKnown RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.11■□□□□ 0.01
LIG3-205ENST00000585941 LENG1Q96BZ8 264 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 KRT12Q99456 494 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 MTG1Q9BT17 334 aaPredicted RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 PARVAQ9NVD7 372 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 DPP3Q9NY33 737 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 NXF1Q9UBU9 619 aaKnown RBP15.11■□□□□ 0.01
LIG3-205ENST00000585941 ANAPC7Q9UJX3 599 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 PCDHA3Q9Y5H8 950 aa15.11■□□□□ 0.01
LIG3-205ENST00000585941 MYO1FO00160 1098 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 MEFVO15553 781 aaPredicted RBP15.1■□□□□ 0.01
LIG3-205ENST00000585941 NPTXRO95502 500 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 FGGP02679 453 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 WEE2P0C1S8 567 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 CYBAP13498 195 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 RRM1P23921 792 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 RNASE9P60153 205 aaKnown RBP15.1■□□□□ 0.01
LIG3-205ENST00000585941 NKX3-2P78367 333 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 BEX3Q00994 111 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 TAP1Q03518 808 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 SEL1L2Q5TEA6 688 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 PLEKHA7Q6IQ23 1121 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 RUFY4Q6ZNE9 571 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 MAATS1Q7Z4T9 603 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 CCDC26Q8TAB7 109 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 CXorf38Q8TB03 319 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 DNAJB3Q8WWF6 145 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 HPDLQ96IR7 371 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 OSMRQ99650 979 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 UPF3AQ9H1J1 476 aaKnown RBP15.1■□□□□ 0.01
LIG3-205ENST00000585941 VIPAS39Q9H9C1 493 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 DMGDHQ9UI17 866 aaKnown RBP15.1■□□□□ 0.01
LIG3-205ENST00000585941 GINS2Q9Y248 185 aa15.1■□□□□ 0.01
LIG3-205ENST00000585941 A0A0U1RQG5 324 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms