RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 MYO1CO00159 1063 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TRIM66O15016 1216 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 P4HA2O15460 535 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 KRT19P08727 400 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GHRP10912 638 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 MYL6P60660 151 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 RNF10Q8N5U6 811 aaKnown RBP13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ADPGKQ9BRR6 497 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 LRRC1Q9BTT6 524 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 STARD7Q9NQZ5 370 aa13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 BZW2Q9Y6E2 419 aaKnown RBP13.6□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TMCO5BA8MYB1 307 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 B4GALT4O60513 344 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TCP1P17987 556 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GTF2H1P32780 548 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 SOX5P35711 763 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 STAT1P42224 750 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NCOA4Q13772 614 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NAB2Q15742 525 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ALKBH5Q6P6C2 394 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PLCD3Q8N3E9 789 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NME8Q8N427 588 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 RPGRIP1Q96KN7 1286 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ZMAT2Q96NC0 199 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ACAP3Q96P50 834 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TRIM6Q9C030 488 aaPredicted RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CWC15Q9P013 229 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ST3GAL5Q9UNP4 418 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NUB1Q9Y5A7 615 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CLTAP09496 248 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PAFAH1B1P43034 410 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 DUOXA2Q1HG44 320 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CCDC70Q6NSX1 233 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NOTUMQ6P988 496 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 SLC27A1Q6PCB7 646 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 U2AF1L4Q8WU68 220 aaKnown RBP13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NT5C1BQ96P26 610 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TLR10Q9BXR5 811 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NAGPAQ9UK23 515 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 FBXL5Q9UKA1 691 aa13.59□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ZSCAN5CA6NGD5 496 aaPredicted RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CYP26A1O43174 497 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 RPS6KA5O75582 802 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 TMEM191BP0C7N4 346 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CCL5P13501 91 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CD52P31358 61 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ATN1P54259 1190 aaPredicted RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CDC42EP1Q00587 391 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 UBXN11Q5T124 520 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ZNF618Q5T7W0 954 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 TWF2Q6IBS0 349 aaKnown RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PALB2Q86YC2 1186 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 WDR49Q8IV35 697 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 C10orf67Q8IYJ2 551 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SLC20A1Q8WUM9 679 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SENP6Q9GZR1 1112 aaPredicted RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ESYT3A0FGR9 886 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 M0QZ92 97 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PMM2O15305 246 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SGPL1O95470 568 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SSTR3P32745 418 aaPredicted RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 AFF1P51825 1210 aaKnown RBP13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PRMT2P55345 433 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 FOXR1Q6PIV2 292 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SLC47A2Q86VL8 602 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 C1orf127Q8N9H9 656 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ARRDC4Q8NCT1 418 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 RSPH14Q9UHP6 348 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SIX4Q9UIU6 781 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 TRPV2Q9Y5S1 764 aa13.58□□□□□ -0.24
CDK5RAP3-217ENST00000580287 RECQL4O94761 1208 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CHRM1P11229 460 aaPredicted RBP13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 FERP16591 822 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PPARDQ03181 441 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SCARA5Q6ZMJ2 495 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SRLQ86TD4 932 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 RSPH3Q86UC2 560 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 GLYCTKQ8IVS8 523 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 C18orf25Q96B23 403 aaPredicted RBP13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PARP2Q9UGN5 583 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 MROH7Q68CQ1 1323 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 MOXD2PA6NHM9 499 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ITGB3P05106 788 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ACTN2P35609 894 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 NOP14P78316 857 aaKnown RBP13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 MGAT3Q09327 533 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 WDR44Q5JSH3 913 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 WDR93Q6P2C0 686 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SESTD1Q86VW0 696 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 SPATA4Q8NEY3 305 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 LPPQ93052 612 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 KIF12Q96FN5 646 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 PAK6Q9NQU5 681 aaPredicted RBP13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 CACNG4Q9UBN1 327 aa13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 NXF1Q9UBU9 619 aaKnown RBP13.57□□□□□ -0.24
CDK5RAP3-217ENST00000580287 WEE2P0C1S8 567 aa13.56□□□□□ -0.24
CDK5RAP3-217ENST00000580287 KRT5P13647 590 aa13.56□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ZNF394Q53GI3 561 aa13.56□□□□□ -0.24
CDK5RAP3-217ENST00000580287 OLIG1Q8TAK6 271 aa13.56□□□□□ -0.24
CDK5RAP3-217ENST00000580287 ZFP42Q96MM3 310 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms