RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 BCO2Q9BYV7 579 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 ELAC1Q9H777 363 aaKnown RBP14.67□□□□□ -0.06
CCDC40-209ENST00000573474 CYP3A43Q9HB55 503 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 MIOSQ9NXC5 875 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 NXF1Q9UBU9 619 aaKnown RBP14.67□□□□□ -0.06
CCDC40-209ENST00000573474 POLIQ9UNA4 740 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 CNTN6Q9UQ52 1028 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 PCDHB4Q9Y5E5 795 aa14.67□□□□□ -0.06
CCDC40-209ENST00000573474 KIAA0355O15063 1070 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 ZNF500O60304 480 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 LCA5LO95447 670 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 TIMP1P01033 207 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 EN2P19622 333 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 SCNN1GP51170 649 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 TNNC1P63316 161 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 SOX4Q06945 474 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 SPA17Q15506 151 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 GLB1LQ6UWU2 654 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 UBE2Q1Q7Z7E8 422 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 ZNF560Q96MR9 790 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 DESI2Q9BSY9 194 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 FAM124BQ9H5Z6 455 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 RNF216Q9NWF9 866 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-209ENST00000573474 TMEM161AQ9NX61 479 aa14.66□□□□□ -0.06
CCDC40-209ENST00000573474 PPEF2O14830 753 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 WEE2P0C1S8 567 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 TNFAIP3P21580 790 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 RPL9P32969 192 aaKnown RBP14.65□□□□□ -0.06
CCDC40-209ENST00000573474 AFF1P51825 1210 aaKnown RBP14.65□□□□□ -0.06
CCDC40-209ENST00000573474 GRIK3Q13003 919 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 BMS1Q14692 1282 aaKnown RBP14.65□□□□□ -0.06
CCDC40-209ENST00000573474 NAB2Q15742 525 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 SLC18A3Q16572 532 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 TMEM270Q6UE05 265 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 SCARA5Q6ZMJ2 495 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 DEFB128Q7Z7B8 93 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 TTC39CQ8N584 583 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 RBBP8NLQ8NC74 664 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-209ENST00000573474 ACRBPQ8NEB7 543 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 AGPAT1Q99943 283 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 SYT11Q9BT88 431 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 CISHQ9NSE2 258 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 SPTLC3Q9NUV7 552 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 TRMT1Q9NXH9 659 aaKnown RBP14.65□□□□□ -0.06
CCDC40-209ENST00000573474 ADAMTS1Q9UHI8 967 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 PCDHB7Q9Y5E2 793 aa14.65□□□□□ -0.06
CCDC40-209ENST00000573474 BRCA2P51587 3418 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 KIAA0100Q14667 2235 aaKnown RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TRIM43BA6NCK2 446 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 GOLGA6L9A6NEM1 432 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 CYP11B1P15538 503 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 CD58P19256 250 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TAF6P49848 677 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 PDE6CP51160 858 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF132P52740 706 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TCTN1Q2MV58 587 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 SV2CQ496J9 727 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 C10orf76Q5T2E6 689 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 CNKSR3Q6P9H4 555 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 SLC47A2Q86VL8 602 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 REXO1L1PQ8IX06 675 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TXLNBQ8N3L3 684 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 SLC30A5Q8TAD4 765 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 URGCPQ8TCY9 931 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 EPS8L1Q8TE68 723 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TRIM43Q96BQ3 446 aaPredicted RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 DDX27Q96GQ7 796 aaKnown RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 PPP1R13BQ96KQ4 1090 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 UROC1Q96N76 676 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 MMS19Q96T76 1030 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 SMYD3Q9H7B4 428 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 GOLGA2P5Q9HBQ8 144 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 LUC7LQ9NQ29 371 aaKnown RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 PRDM5Q9NQX1 630 aaPredicted RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 GDAP2Q9NXN4 497 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 KANSL3Q9P2N6 904 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 NOCTQ9UK39 431 aaKnown RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 LRFN2Q9ULH4 789 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 INPP5FQ9Y2H2 1132 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 REXO2Q9Y3B8 237 aaKnown RBP14.64□□□□□ -0.07
CCDC40-209ENST00000573474 TRIP11Q15643 1979 aa14.64□□□□□ -0.07
CCDC40-209ENST00000573474 PDCD11Q14690 1871 aaKnown RBP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 A0A087X0T9 212 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 USP27XA6NNY8 438 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 KPNA7A9QM74 516 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 DDX3XO00571 662 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF263O14978 683 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 HOXA2O43364 376 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 POMCP01189 267 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 FAM228BP0C875 321 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 RAG1P15918 1043 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 MAGEA1P43355 309 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 CDH8P55286 799 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 LILRA4P59901 499 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 CYP27A1Q02318 531 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 GFPT1Q06210 699 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 IKBKEQ14164 716 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 NOMO2Q5JPE7 1267 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms