RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 KARSQ15046 597 aaKnown RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 PTPAQ15257 358 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 NAB2Q15742 525 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 USP41Q3LFD5 358 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 TMEM31Q5JXX7 168 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 SPECC1Q5M775 1068 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 ATAT1Q5SQI0 421 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 RARS2Q5T160 578 aaKnown RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 FUT10Q6P4F1 479 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 HAUS6Q7Z4H7 955 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 GPBP1Q86WP2 473 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 RNF168Q8IYW5 571 aaPredicted RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 C12orf76Q8N812 135 aaPredicted RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 TMEM161BQ8NDZ6 487 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 EPSTI1Q96J88 318 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 ZBTB45Q96K62 511 aaPredicted RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 RIPOR3Q96MK2 946 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 PAAF1Q9BRP4 392 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 LRFN3Q9BTN0 628 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 HERC2P3Q9BVR0 1158 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 CCDC94Q9BW85 323 aaPredicted RBP8.14□□□□□ -1.11
NUP88-205ENST00000572809 GPR62Q9BZJ7 368 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 CCSER1Q9C0I3 900 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 CXCL16Q9H2A7 254 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 RXFP1Q9HBX9 757 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 ENAMQ9NRM1 1142 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 BLOC1S4Q9NUP1 217 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 DZANK1Q9NVP4 752 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 CCDC39Q9UFE4 941 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 ADAM28Q9UKQ2 775 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 ODF2LQ9ULJ1 636 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 MTMR6Q9Y217 621 aa8.14□□□□□ -1.11
NUP88-205ENST00000572809 TDRD15B5MCY1 1934 aaKnown RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 SMIM28A0A1B0GU29 152 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CASTOR2A6NHX0 329 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 TMEM229AB2RXF0 380 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 H0YCG3 227 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 TEX28O15482 410 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 KRT18P05783 430 aaKnown RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 ADH1AP07327 375 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 MAPTP10636 758 aaKnown RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 MCF2P10911 925 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 PLCG1P19174 1290 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 PROZP22891 400 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 MTHFRP42898 656 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 SLC39A14Q15043 492 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 ZNF568Q3ZCX4 644 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 DCLRE1AQ6PJP8 1040 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 MPZL3Q6UWV2 235 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 ALKAL1Q6UXT8 129 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CEP57Q86XR8 500 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 PALB2Q86YC2 1186 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 GPR65Q8IYL9 337 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 MYCT1Q8N699 235 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CEP120Q8N960 986 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 LRRC15Q8TF66 581 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 RIN2Q8WYP3 895 aaPredicted RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 LARP4BQ92615 738 aaKnown RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 RAD54LQ92698 747 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 B3GALT6Q96L58 329 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 FBXL18Q96ME1 805 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CLIC6Q96NY7 704 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 NECTIN4Q96NY8 510 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 ACAP3Q96P50 834 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 REEP2Q9BRK0 252 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CDT1Q9H211 546 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 POLMQ9NP87 494 aaPredicted RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.13□□□□□ -1.11
NUP88-205ENST00000572809 TOPORSQ9NS56 1045 aaPredicted RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 FNIP2Q9P278 1114 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 CACNG4Q9UBN1 327 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 DPP7Q9UHL4 492 aa8.13□□□□□ -1.11
NUP88-205ENST00000572809 FBXO2Q9UK22 296 aaPredicted RBP8.13□□□□□ -1.11
NUP88-205ENST00000572809 SF3B1O75533 1304 aaKnown RBP eCLIP8.12□□□□□ -1.11
NUP88-205ENST00000572809 FAM86C2PA6NEL3 165 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 ABLIM1O14639 778 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 CLDN3O15551 220 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 TOM1L1O75674 476 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 FAM13AO94988 1023 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 GLUD1P00367 558 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 ABL1P00519 1130 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 C1RP00736 705 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 HSP90AA1P07900 732 aaKnown RBP8.12□□□□□ -1.11
NUP88-205ENST00000572809 WEE2P0C1S8 567 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 SPATA31D3P0C874 917 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 SCP2P22307 547 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 MATR3P43243 847 aaKnown RBP eCLIP8.12□□□□□ -1.11
NUP88-205ENST00000572809 SERPINB4P48594 390 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 CLCNKBP51801 687 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 NCKAP1LP55160 1127 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 ELAVL2Q12926 359 aaKnown RBP8.12□□□□□ -1.11
NUP88-205ENST00000572809 GAS6Q14393 721 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 XKR4Q5GH76 650 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 HERC4Q5GLZ8 1057 aaPredicted RBP8.12□□□□□ -1.11
NUP88-205ENST00000572809 GLRA4Q5JXX5 417 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 FAM171A1Q5VUB5 890 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 RRAGBQ5VZM2 374 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 ELMSAN1Q6PJG2 1045 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 TMC5Q6UXY8 1006 aa8.12□□□□□ -1.11
NUP88-205ENST00000572809 ZPBP2Q6X784 338 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms