RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 IRX4P78413 519 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 AKAP17AQ02040 695 aaKnown RBP19.9■□□□□ 0.78
CLK3-227ENST00000570296 TNK2Q07912 1038 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 SCAPQ12770 1279 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 MRPL58Q14197 206 aaKnown RBP19.9■□□□□ 0.78
CLK3-227ENST00000570296 EPHA7Q15375 998 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 FAM187BQ17R55 369 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 DHX32Q7L7V1 743 aaKnown RBP19.9■□□□□ 0.78
CLK3-227ENST00000570296 PIP4P1Q86T03 277 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 TCEANC2Q96MN5 208 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 LRRC3Q9BY71 257 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 DAXXQ9UER7 740 aaPredicted RBP19.9■□□□□ 0.78
CLK3-227ENST00000570296 CCDC194A0A1B0GVG4 234 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 TRDMT1O14717 391 aaKnown RBP19.89■□□□□ 0.77
CLK3-227ENST00000570296 ZBTB39O15060 712 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 RNF40O75150 1001 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 CACNB1Q02641 598 aaPredicted RBP19.89■□□□□ 0.77
CLK3-227ENST00000570296 TMC8Q8IU68 726 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 FZD8Q9H461 694 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 SH3GLB2Q9NR46 395 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 VPS54Q9P1Q0 977 aa19.89■□□□□ 0.77
CLK3-227ENST00000570296 SLC37A4O43826 429 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 WEE1P30291 646 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 ZNF423Q2M1K9 1284 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 SYT13Q7L8C5 426 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 RAB44Q7Z6P3 723 aaPredicted RBP19.88■□□□□ 0.77
CLK3-227ENST00000570296 NOSTRINQ8IVI9 506 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 CHCHD4Q8N4Q1 142 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 BPIFB1Q8TDL5 484 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 ADPGKQ9BRR6 497 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 KCNMB3Q9NPA1 279 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 SCUBE2Q9NQ36 999 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 POLR3BQ9NW08 1133 aaPredicted RBP19.88■□□□□ 0.77
CLK3-227ENST00000570296 RGL1Q9NZL6 768 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 NAP1L2Q9ULW6 460 aaPredicted RBP19.88■□□□□ 0.77
CLK3-227ENST00000570296 GON4LQ3T8J9 2241 aa19.88■□□□□ 0.77
CLK3-227ENST00000570296 NID2Q14112 1375 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 CFAP46Q8IYW2 2715 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 NLRP5P59047 1200 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 SEMA3BQ13214 749 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 PLD1Q13393 1074 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 CTXN3Q4LDR2 81 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 GLRA4Q5JXX5 417 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 STXBP5Q5T5C0 1151 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 CDCA2Q69YH5 1023 aaPredicted RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 GPIHBP1Q8IV16 184 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 DYDC2Q96IM9 177 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 RNF26Q9BY78 433 aaPredicted RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 POLR3FQ9H1D9 316 aaPredicted RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 CCDC86Q9H6F5 360 aaKnown RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 GOLGA2P5Q9HBQ8 144 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 THG1LQ9NWX6 298 aaKnown RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 YIPF1Q9Y548 306 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 KIAA1549LQ6ZVL6 1849 aa19.87■□□□□ 0.77
CLK3-227ENST00000570296 URB1O60287 2271 aaKnown RBP19.87■□□□□ 0.77
CLK3-227ENST00000570296 LRRIQ4A6NIV6 560 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 MCM2P49736 904 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 C19orf57Q0VDD7 668 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 CTTNQ14247 550 aaKnown RBP19.86■□□□□ 0.77
CLK3-227ENST00000570296 FBXO43Q4G163 708 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 USP39Q53GS9 565 aaKnown RBP19.86■□□□□ 0.77
CLK3-227ENST00000570296 PPP4R3AQ6IN85 833 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 ZNF280DQ6N043 979 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 NUSAP1Q9BXS6 441 aaKnown RBP19.86■□□□□ 0.77
CLK3-227ENST00000570296 PCDHA4Q9UN74 947 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 GDAQ9Y2T3 454 aa19.86■□□□□ 0.77
CLK3-227ENST00000570296 TTLL13PA6NNM8 815 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 EGFP01133 1207 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 DRD1P21728 446 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 AMPD2Q01433 879 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 PRPF4BQ13523 1007 aaKnown RBP19.85■□□□□ 0.77
CLK3-227ENST00000570296 TMEM132AQ24JP5 1023 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 DCAF4L1Q3SXM0 396 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 TRIM61Q5EBN2 209 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 RNF20Q5VTR2 975 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 ZBTB8OSQ8IWT0 167 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 ACDQ96AP0 544 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 ANKEF1Q9NU02 776 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 MYO16Q9Y6X6 1858 aa19.85■□□□□ 0.77
CLK3-227ENST00000570296 TNRC6BQ9UPQ9 1833 aaKnown RBP19.85■□□□□ 0.77
CLK3-227ENST00000570296 ZNF462Q96JM2 2506 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 LYPLA2O95372 231 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 PRAMEF12O95522 483 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 FGF19O95750 216 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 MAPK8P45983 427 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 DGKEP52429 567 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 EPHB3P54753 998 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 CYP4A11Q02928 519 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 DMC1Q14565 340 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 ARHGAP15Q53QZ3 475 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 RNF19BQ6ZMZ0 732 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 BEST2Q8NFU1 509 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 HNRNPLLQ8WVV9 542 aaKnown RBP19.84■□□□□ 0.77
CLK3-227ENST00000570296 PIGKQ92643 395 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 LRIG1Q96JA1 1093 aa19.84■□□□□ 0.77
CLK3-227ENST00000570296 SMIM28A0A1B0GU29 152 aa19.83■□□□□ 0.77
CLK3-227ENST00000570296 M0R2N6 131 aa19.83■□□□□ 0.77
CLK3-227ENST00000570296 PODXLO00592 558 aa19.83■□□□□ 0.77
CLK3-227ENST00000570296 CPB1P15086 417 aa19.83■□□□□ 0.77
CLK3-227ENST00000570296 DHPSP49366 369 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms