RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 APBB1IPQ7Z5R6 666 aaPredicted RBP13.19□□□□□ -0.3
CAPN3-220ENST00000569827 ELMOD1Q8N336 334 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 TTC9BQ8N6N2 239 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 SHKBP1Q8TBC3 707 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 FAM3CQ92520 227 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 SMARCD2Q92925 531 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 ZFYVE19Q96K21 471 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 SUSD3Q96L08 255 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 NELL2Q99435 816 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 HAPLN2Q9GZV7 340 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 SLC38A7Q9NVC3 462 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 MRPS17Q9Y2R5 130 aaKnown RBP13.19□□□□□ -0.3
CAPN3-220ENST00000569827 YIPF1Q9Y548 306 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 ANAPC1Q9H1A4 1944 aa13.19□□□□□ -0.3
CAPN3-220ENST00000569827 NPHP3-ACAD11A0A0J9YXS1 232 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 A0A1W2PRU2 124 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 HEPACAM2A8MVW5 462 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 CHURC1-FNTBB4DL54 471 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 H7C4K7 107 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 PPEF2O14830 753 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 MCF2P10911 925 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 KCNE1P15382 129 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 PSMC3P17980 439 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 KCNA4P22459 653 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 TNFSF9P41273 254 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 MATR3P43243 847 aaKnown RBP eCLIP13.18□□□□□ -0.3
CAPN3-220ENST00000569827 FNTBP49356 437 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 CYP4A22Q5TCH4 519 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 RINT1Q6NUQ1 792 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 MAP4K3Q8IVH8 894 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 IRF7Q92985 503 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 SECISBP2LQ93073 1101 aaKnown RBP13.18□□□□□ -0.3
CAPN3-220ENST00000569827 ZNF512Q96ME7 567 aaPredicted RBP13.18□□□□□ -0.3
CAPN3-220ENST00000569827 TMEM209Q96SK2 561 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 FOXP1Q9H334 677 aaPredicted RBP13.18□□□□□ -0.3
CAPN3-220ENST00000569827 TMEM134Q9H6X4 195 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 ASAH2Q9NR71 780 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 GMEB2Q9UKD1 530 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 NUP205Q92621 2012 aa13.18□□□□□ -0.3
CAPN3-220ENST00000569827 ZNF197O14709 1029 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 ZNF263O14978 683 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 NOLC1Q14978 699 aaKnown RBP eCLIP13.17□□□□□ -0.3
CAPN3-220ENST00000569827 TPGS2Q68CL5 300 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 IQCEQ6IPM2 695 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 C1orf186Q6ZWK4 172 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 RTL10Q7L3V2 364 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 TMC8Q8IU68 726 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 IGSF22Q8N9C0 903 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 FBXO18Q8NFZ0 1043 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 MMTAG2Q9BU76 263 aaKnown RBP13.17□□□□□ -0.3
CAPN3-220ENST00000569827 DNAJC25Q9H1X3 360 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 AFF4Q9UHB7 1163 aaKnown RBP13.17□□□□□ -0.3
CAPN3-220ENST00000569827 NOL7Q9UMY1 257 aaKnown RBP13.17□□□□□ -0.3
CAPN3-220ENST00000569827 PCDHB8Q9UN66 801 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 DNM3Q9UQ16 869 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 SLC27A5Q9Y2P5 690 aa13.17□□□□□ -0.3
CAPN3-220ENST00000569827 FRYQ5TBA9 3013 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 MYOFQ9NZM1 2061 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 HELZP42694 1942 aaKnown RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 ARNTLO00327 626 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 MAN2B1O00754 1011 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 CHRNB1P11230 501 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 MUTP22033 750 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 MARCKSP29966 332 aaPredicted RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 RPL9P32969 192 aaKnown RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 LMNB2Q03252 620 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 YWHAHQ04917 246 aaPredicted RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 DUSP4Q13115 394 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 ORC2Q13416 577 aaPredicted RBP13.16□□□□□ -0.3
CAPN3-220ENST00000569827 TXNDC11Q6PKC3 985 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 KIF12Q96FN5 646 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 DRC1Q96MC2 740 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 LRRC3BQ96PB8 259 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 LRRC3Q9BY71 257 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 GTSE1Q9NYZ3 720 aa13.16□□□□□ -0.3
CAPN3-220ENST00000569827 ABCA7Q8IZY2 2146 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 THADAQ6YHU6 1953 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 HRO43593 1189 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 GDF9O60383 454 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 MAPTP10636 758 aaKnown RBP13.15□□□□□ -0.3
CAPN3-220ENST00000569827 CCR3P51677 355 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 KPNA1P52294 538 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-220ENST00000569827 EPHA5P54756 1037 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 STRN3Q13033 797 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 SIM2Q14190 667 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-220ENST00000569827 CCDC6Q16204 474 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 KRT79Q5XKE5 535 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 MFSD6LQ8IWD5 586 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 YAF2Q8IY57 180 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 FAM184AQ8NB25 1140 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 ATAD1Q8NBU5 361 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 TMEM161BQ8NDZ6 487 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 APPL2Q8NEU8 664 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 CSGALNACT1Q8TDX6 532 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 DEPDC1BQ8WUY9 529 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 BICD1Q96G01 975 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 PNMA5Q96PV4 448 aa13.15□□□□□ -0.3
CAPN3-220ENST00000569827 SMG9Q9H0W8 520 aaKnown RBP13.15□□□□□ -0.3
CAPN3-220ENST00000569827 RAB23Q9ULC3 237 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms